miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24457 3' -55.6 NC_005264.1 + 70326 1.08 0.00352
Target:  5'- gAACUCGUCCGCGGAUCCACAGAUGGCc -3'
miRNA:   3'- -UUGAGCAGGCGCCUAGGUGUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 114184 0.7 0.734413
Target:  5'- aGugUCGgguaacgUCGCGGAUCU--GGAUGGCa -3'
miRNA:   3'- -UugAGCa------GGCGCCUAGGugUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 140641 0.7 0.753828
Target:  5'- cACUUG-CCGCGcacgCCACAGAUGGa -3'
miRNA:   3'- uUGAGCaGGCGCcua-GGUGUCUACCg -5'
24457 3' -55.6 NC_005264.1 + 53271 0.69 0.800326
Target:  5'- uGGCUUGcugucCCGCGGcgCCGCAGuuUGGUu -3'
miRNA:   3'- -UUGAGCa----GGCGCCuaGGUGUCu-ACCG- -5'
24457 3' -55.6 NC_005264.1 + 106851 0.69 0.817921
Target:  5'- gGACUCGuucaUCUGCGGggUCAUGGGcgGGCa -3'
miRNA:   3'- -UUGAGC----AGGCGCCuaGGUGUCUa-CCG- -5'
24457 3' -55.6 NC_005264.1 + 61030 0.68 0.829839
Target:  5'- cGACUCGUCCuaCGGAgccucugagcugucuUCUGCGG-UGGCa -3'
miRNA:   3'- -UUGAGCAGGc-GCCU---------------AGGUGUCuACCG- -5'
24457 3' -55.6 NC_005264.1 + 142781 0.68 0.843027
Target:  5'- uGCUCGcuaCGCGGggCCGC--GUGGCg -3'
miRNA:   3'- uUGAGCag-GCGCCuaGGUGucUACCG- -5'
24457 3' -55.6 NC_005264.1 + 142022 0.68 0.851021
Target:  5'- cGC-CGUCCGCGcGAUUgGCGuGcAUGGCg -3'
miRNA:   3'- uUGaGCAGGCGC-CUAGgUGU-C-UACCG- -5'
24457 3' -55.6 NC_005264.1 + 2665 0.68 0.858817
Target:  5'- cAGCUcugaCGUCCuaguCGGGUCCGCaAGcgGGCu -3'
miRNA:   3'- -UUGA----GCAGGc---GCCUAGGUG-UCuaCCG- -5'
24457 3' -55.6 NC_005264.1 + 16429 0.67 0.866408
Target:  5'- cGCUCGacugCCGCGGGgccugcCCGCGGGUGu- -3'
miRNA:   3'- uUGAGCa---GGCGCCUa-----GGUGUCUACcg -5'
24457 3' -55.6 NC_005264.1 + 77478 0.67 0.880951
Target:  5'- cGGCUCGg--GCuGGGUCCACucugaauuaGGAUGGCc -3'
miRNA:   3'- -UUGAGCaggCG-CCUAGGUG---------UCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 124376 0.67 0.880951
Target:  5'- cGCUCGUCCcggGCGGccUCGCGGAUGa- -3'
miRNA:   3'- uUGAGCAGG---CGCCuaGGUGUCUACcg -5'
24457 3' -55.6 NC_005264.1 + 97653 0.67 0.880951
Target:  5'- cAGCUCGgcgaaaaggCCGCGGccauggCCAgAGAgGGCg -3'
miRNA:   3'- -UUGAGCa--------GGCGCCua----GGUgUCUaCCG- -5'
24457 3' -55.6 NC_005264.1 + 5349 0.67 0.880951
Target:  5'- cGCUCGUCCcggGCGGccUCGCGGAUGa- -3'
miRNA:   3'- uUGAGCAGG---CGCCuaGGUGUCUACcg -5'
24457 3' -55.6 NC_005264.1 + 93123 0.67 0.887893
Target:  5'- cGCUC--CCGCGG-UUCAC-GAUGGCg -3'
miRNA:   3'- uUGAGcaGGCGCCuAGGUGuCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 57555 0.67 0.901095
Target:  5'- uGCUaCGUCCGCGGuaccGUUUugGGccuuUGGCg -3'
miRNA:   3'- uUGA-GCAGGCGCC----UAGGugUCu---ACCG- -5'
24457 3' -55.6 NC_005264.1 + 6243 0.67 0.901095
Target:  5'- uGCggCGgccCCGCGGAUCCuCAGucUGGUc -3'
miRNA:   3'- uUGa-GCa--GGCGCCUAGGuGUCu-ACCG- -5'
24457 3' -55.6 NC_005264.1 + 4513 0.66 0.907349
Target:  5'- gGACUgggCGUCCGCGGAgggggAgGGGUGGUc -3'
miRNA:   3'- -UUGA---GCAGGCGCCUagg--UgUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 123540 0.66 0.907349
Target:  5'- gGACUgggCGUCCGCGGAgggggAgGGGUGGUc -3'
miRNA:   3'- -UUGA---GCAGGCGCCUagg--UgUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 26122 0.66 0.907349
Target:  5'- cGGCUCGUggCGCGGcgCCGagAGaAUGGCg -3'
miRNA:   3'- -UUGAGCAg-GCGCCuaGGUg-UC-UACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.