Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24457 | 3' | -55.6 | NC_005264.1 | + | 2665 | 0.68 | 0.858817 |
Target: 5'- cAGCUcugaCGUCCuaguCGGGUCCGCaAGcgGGCu -3' miRNA: 3'- -UUGA----GCAGGc---GCCUAGGUG-UCuaCCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 4513 | 0.66 | 0.907349 |
Target: 5'- gGACUgggCGUCCGCGGAgggggAgGGGUGGUc -3' miRNA: 3'- -UUGA---GCAGGCGCCUagg--UgUCUACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 5349 | 0.67 | 0.880951 |
Target: 5'- cGCUCGUCCcggGCGGccUCGCGGAUGa- -3' miRNA: 3'- uUGAGCAGG---CGCCuaGGUGUCUACcg -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 6243 | 0.67 | 0.901095 |
Target: 5'- uGCggCGgccCCGCGGAUCCuCAGucUGGUc -3' miRNA: 3'- uUGa-GCa--GGCGCCUAGGuGUCu-ACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 16429 | 0.67 | 0.866408 |
Target: 5'- cGCUCGacugCCGCGGGgccugcCCGCGGGUGu- -3' miRNA: 3'- uUGAGCa---GGCGCCUa-----GGUGUCUACcg -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 25736 | 0.66 | 0.935054 |
Target: 5'- uACUCGgUCGCGGAgaggCCAguGAUGcucacGCg -3' miRNA: 3'- uUGAGCaGGCGCCUa---GGUguCUAC-----CG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 26122 | 0.66 | 0.907349 |
Target: 5'- cGGCUCGUggCGCGGcgCCGagAGaAUGGCg -3' miRNA: 3'- -UUGAGCAg-GCGCCuaGGUg-UC-UACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 32223 | 0.66 | 0.935054 |
Target: 5'- cGACUCG-CCGCuuauuauUCCAUAGAUgacGGCg -3' miRNA: 3'- -UUGAGCaGGCGccu----AGGUGUCUA---CCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 47638 | 0.66 | 0.926838 |
Target: 5'- uACUCGUgcggcuUCGCGGAUgucgcggagugagaaUCGCAGAcgcguUGGCg -3' miRNA: 3'- uUGAGCA------GGCGCCUA---------------GGUGUCU-----ACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 53271 | 0.69 | 0.800326 |
Target: 5'- uGGCUUGcugucCCGCGGcgCCGCAGuuUGGUu -3' miRNA: 3'- -UUGAGCa----GGCGCCuaGGUGUCu-ACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 57555 | 0.67 | 0.901095 |
Target: 5'- uGCUaCGUCCGCGGuaccGUUUugGGccuuUGGCg -3' miRNA: 3'- uUGA-GCAGGCGCC----UAGGugUCu---ACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 61030 | 0.68 | 0.829839 |
Target: 5'- cGACUCGUCCuaCGGAgccucugagcugucuUCUGCGG-UGGCa -3' miRNA: 3'- -UUGAGCAGGc-GCCU---------------AGGUGUCuACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 70326 | 1.08 | 0.00352 |
Target: 5'- gAACUCGUCCGCGGAUCCACAGAUGGCc -3' miRNA: 3'- -UUGAGCAGGCGCCUAGGUGUCUACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 75290 | 0.66 | 0.909784 |
Target: 5'- uGCUgGUCCGaugcggacgacuccuCGGAggCCGCGGgcGGCu -3' miRNA: 3'- uUGAgCAGGC---------------GCCUa-GGUGUCuaCCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 77478 | 0.67 | 0.880951 |
Target: 5'- cGGCUCGg--GCuGGGUCCACucugaauuaGGAUGGCc -3' miRNA: 3'- -UUGAGCaggCG-CCUAGGUG---------UCUACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 93123 | 0.67 | 0.887893 |
Target: 5'- cGCUC--CCGCGG-UUCAC-GAUGGCg -3' miRNA: 3'- uUGAGcaGGCGCCuAGGUGuCUACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 93818 | 0.66 | 0.929991 |
Target: 5'- cGACUCG-CCGUGG---CACAguacGAUGGCg -3' miRNA: 3'- -UUGAGCaGGCGCCuagGUGU----CUACCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 97653 | 0.67 | 0.880951 |
Target: 5'- cAGCUCGgcgaaaaggCCGCGGccauggCCAgAGAgGGCg -3' miRNA: 3'- -UUGAGCa--------GGCGCCua----GGUgUCUaCCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 106851 | 0.69 | 0.817921 |
Target: 5'- gGACUCGuucaUCUGCGGggUCAUGGGcgGGCa -3' miRNA: 3'- -UUGAGC----AGGCGCCuaGGUGUCUa-CCG- -5' |
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24457 | 3' | -55.6 | NC_005264.1 | + | 114184 | 0.7 | 0.734413 |
Target: 5'- aGugUCGgguaacgUCGCGGAUCU--GGAUGGCa -3' miRNA: 3'- -UugAGCa------GGCGCCUAGGugUCUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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