miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24457 5' -54.7 NC_005264.1 + 5152 0.65 0.955385
Target:  5'- gCGUCGCCGUcgucgucGGUGccgGCCuCGUCGGAc -3'
miRNA:   3'- gGCGGUGGCG-------UCACa--UGG-GCAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 124179 0.65 0.955385
Target:  5'- gCGUCGCCGUcgucgucGGUGccgGCCuCGUCGGAc -3'
miRNA:   3'- gGCGGUGGCG-------UCACa--UGG-GCAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 99864 0.65 0.954209
Target:  5'- uCCGCCaaaGCCGCGGUGgcggggaagucugACCCcgaaCAAAAg -3'
miRNA:   3'- -GGCGG---UGGCGUCACa------------UGGGca--GUUUU- -5'
24457 5' -54.7 NC_005264.1 + 59405 0.66 0.951795
Target:  5'- aCGCUGuCC-CAGUcGUGCCUGUCGAu- -3'
miRNA:   3'- gGCGGU-GGcGUCA-CAUGGGCAGUUuu -5'
24457 5' -54.7 NC_005264.1 + 113467 0.66 0.951795
Target:  5'- aCCGaCC-CCGCGGUcGUGCCacgGUCGc-- -3'
miRNA:   3'- -GGC-GGuGGCGUCA-CAUGGg--CAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 2722 0.66 0.947586
Target:  5'- -gGCCGcCCGCGGccggGCCCGUCu--- -3'
miRNA:   3'- ggCGGU-GGCGUCaca-UGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 55906 0.66 0.947152
Target:  5'- gCgGCCGCCGCAGcUGUcgaggaaaaagugACCCGg----- -3'
miRNA:   3'- -GgCGGUGGCGUC-ACA-------------UGGGCaguuuu -5'
24457 5' -54.7 NC_005264.1 + 48354 0.66 0.946715
Target:  5'- aCGCCAUgGCGGccucguugcgcaGUGCCgCGUCGAGg -3'
miRNA:   3'- gGCGGUGgCGUCa-----------CAUGG-GCAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 16479 0.66 0.94314
Target:  5'- aCGCaGCCGCGGUG-GCCUgcgggGUCGAGg -3'
miRNA:   3'- gGCGgUGGCGUCACaUGGG-----CAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 89839 0.66 0.94314
Target:  5'- gCGCCAggagcuuuCUGCGGUGUcCCUGUCu--- -3'
miRNA:   3'- gGCGGU--------GGCGUCACAuGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 7997 0.66 0.933531
Target:  5'- gCCGCCAUUGCGGg--GCCgG-CAGAGg -3'
miRNA:   3'- -GGCGGUGGCGUCacaUGGgCaGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 134370 0.66 0.933531
Target:  5'- gCGCCAUCGCAGauuuagccaGUGUCCGUCGu-- -3'
miRNA:   3'- gGCGGUGGCGUCa--------CAUGGGCAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 33247 0.66 0.933531
Target:  5'- gCCGCCgcGCCGCAGc--GCCUG-CAGAGc -3'
miRNA:   3'- -GGCGG--UGGCGUCacaUGGGCaGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 127024 0.66 0.933531
Target:  5'- gCCGCCAUUGCGGg--GCCgG-CAGAGg -3'
miRNA:   3'- -GGCGGUGGCGUCacaUGGgCaGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 147246 0.66 0.933531
Target:  5'- aUGCCggaGCCGCAGcUGcGCCCG-CAAGc -3'
miRNA:   3'- gGCGG---UGGCGUC-ACaUGGGCaGUUUu -5'
24457 5' -54.7 NC_005264.1 + 136839 0.67 0.928365
Target:  5'- -aGCCACgCGCcGauacUGUACCCGUCu--- -3'
miRNA:   3'- ggCGGUG-GCGuC----ACAUGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 94123 0.67 0.928365
Target:  5'- gCGCCGCUGguGgaaagGUACCCGc----- -3'
miRNA:   3'- gGCGGUGGCguCa----CAUGGGCaguuuu -5'
24457 5' -54.7 NC_005264.1 + 83030 0.67 0.922957
Target:  5'- uUCGUCGCCGCAGgg-GCCuCGUUg--- -3'
miRNA:   3'- -GGCGGUGGCGUCacaUGG-GCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 101954 0.67 0.922957
Target:  5'- gCC-CCACCGCGGcGUACgCCGagAGAc -3'
miRNA:   3'- -GGcGGUGGCGUCaCAUG-GGCagUUUu -5'
24457 5' -54.7 NC_005264.1 + 16933 0.67 0.922957
Target:  5'- cCCGCCGCCGgAGcUGUuccaGCUCGcCAGc- -3'
miRNA:   3'- -GGCGGUGGCgUC-ACA----UGGGCaGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.