miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24457 5' -54.7 NC_005264.1 + 70360 1.09 0.004201
Target:  5'- aCCGCCACCGCAGUGUACCCGUCAAAAg -3'
miRNA:   3'- -GGCGGUGGCGUCACAUGGGCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 78643 0.74 0.587122
Target:  5'- aCCGCCGCgGCGGcccUGUGCCuCGUCc--- -3'
miRNA:   3'- -GGCGGUGgCGUC---ACAUGG-GCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 156612 0.72 0.689766
Target:  5'- -gGCCGCCGCAGa--ACCCGUCu--- -3'
miRNA:   3'- ggCGGUGGCGUCacaUGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 97690 0.71 0.720006
Target:  5'- gCGCCGCCGCGGUGU--UgGUCAu-- -3'
miRNA:   3'- gGCGGUGGCGUCACAugGgCAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 45809 0.71 0.759213
Target:  5'- gCCGCCGCgcugauCGCGcUGUACUCGUCAu-- -3'
miRNA:   3'- -GGCGGUG------GCGUcACAUGGGCAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 102269 0.7 0.787456
Target:  5'- aCGCCGCCGCGGUaauCaaggaCGUCAGGAc -3'
miRNA:   3'- gGCGGUGGCGUCAcauGg----GCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 79719 0.7 0.814426
Target:  5'- gCGCCuCCGCGGccuugGcGCCCGUCGGc- -3'
miRNA:   3'- gGCGGuGGCGUCa----CaUGGGCAGUUuu -5'
24457 5' -54.7 NC_005264.1 + 143745 0.69 0.831582
Target:  5'- gCGCCGCCGCGGUGcaguCCUGg----- -3'
miRNA:   3'- gGCGGUGGCGUCACau--GGGCaguuuu -5'
24457 5' -54.7 NC_005264.1 + 79141 0.69 0.855921
Target:  5'- gCCGCCACCGCAuuucGUGUACUacaCGcgCGGc- -3'
miRNA:   3'- -GGCGGUGGCGU----CACAUGG---GCa-GUUuu -5'
24457 5' -54.7 NC_005264.1 + 24292 0.68 0.863633
Target:  5'- cCCGCCGCaCGCGGUuacauccacgGUGCCgagCGUUGAAGg -3'
miRNA:   3'- -GGCGGUG-GCGUCA----------CAUGG---GCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 35508 0.68 0.863633
Target:  5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3'
miRNA:   3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 154535 0.68 0.863633
Target:  5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3'
miRNA:   3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 394 0.68 0.871134
Target:  5'- gCGCCGgCGCGgucGUGUACCUGUUc--- -3'
miRNA:   3'- gGCGGUgGCGU---CACAUGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 95542 0.68 0.885478
Target:  5'- gCGCCGCCGCGa--UACCCuUCGAAGc -3'
miRNA:   3'- gGCGGUGGCGUcacAUGGGcAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 86813 0.68 0.892312
Target:  5'- uCCGCUGCCGCuGUGUcGgCCGacuUCAGAu -3'
miRNA:   3'- -GGCGGUGGCGuCACA-UgGGC---AGUUUu -5'
24457 5' -54.7 NC_005264.1 + 102692 0.68 0.892312
Target:  5'- gCCGCgCACCGUAGgcUGCUCGUCc--- -3'
miRNA:   3'- -GGCG-GUGGCGUCacAUGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 69016 0.68 0.892312
Target:  5'- gUCGCCAUCGUAcUGUGCCacggcgaGUCGAu- -3'
miRNA:   3'- -GGCGGUGGCGUcACAUGGg------CAGUUuu -5'
24457 5' -54.7 NC_005264.1 + 146369 0.68 0.898915
Target:  5'- -gGCCACCGCGGc-UGCgUCGUCGGAAc -3'
miRNA:   3'- ggCGGUGGCGUCacAUG-GGCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 153145 0.68 0.898915
Target:  5'- aUGCUACCGaCGG-GUAuCCCGUCGu-- -3'
miRNA:   3'- gGCGGUGGC-GUCaCAU-GGGCAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 39365 0.67 0.905284
Target:  5'- gCgGCCACCGCA---UGCCCGUaCAu-- -3'
miRNA:   3'- -GgCGGUGGCGUcacAUGGGCA-GUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.