Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24457 | 5' | -54.7 | NC_005264.1 | + | 35008 | 0.67 | 0.917306 |
Target: 5'- gCCgGCCGCCGCGGaGgcaACgCUGUCGGGAg -3' miRNA: 3'- -GG-CGGUGGCGUCaCa--UG-GGCAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 156417 | 0.67 | 0.911415 |
Target: 5'- aCGCCGCCGCgagAGUGUACgUGg----- -3' miRNA: 3'- gGCGGUGGCG---UCACAUGgGCaguuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 37390 | 0.67 | 0.911415 |
Target: 5'- aCGCCGCCGCgagAGUGUACgUGg----- -3' miRNA: 3'- gGCGGUGGCG---UCACAUGgGCaguuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 123189 | 0.67 | 0.910812 |
Target: 5'- gCCGCCcacGCCGCGGUGUGgggaagcggagggUCCGagGGAc -3' miRNA: 3'- -GGCGG---UGGCGUCACAU-------------GGGCagUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 4162 | 0.67 | 0.910812 |
Target: 5'- gCCGCCcacGCCGCGGUGUGgggaagcggagggUCCGagGGAc -3' miRNA: 3'- -GGCGG---UGGCGUCACAU-------------GGGCagUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 39365 | 0.67 | 0.905284 |
Target: 5'- gCgGCCACCGCA---UGCCCGUaCAu-- -3' miRNA: 3'- -GgCGGUGGCGUcacAUGGGCA-GUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 153145 | 0.68 | 0.898915 |
Target: 5'- aUGCUACCGaCGG-GUAuCCCGUCGu-- -3' miRNA: 3'- gGCGGUGGC-GUCaCAU-GGGCAGUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 146369 | 0.68 | 0.898915 |
Target: 5'- -gGCCACCGCGGc-UGCgUCGUCGGAAc -3' miRNA: 3'- ggCGGUGGCGUCacAUG-GGCAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 69016 | 0.68 | 0.892312 |
Target: 5'- gUCGCCAUCGUAcUGUGCCacggcgaGUCGAu- -3' miRNA: 3'- -GGCGGUGGCGUcACAUGGg------CAGUUuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 102692 | 0.68 | 0.892312 |
Target: 5'- gCCGCgCACCGUAGgcUGCUCGUCc--- -3' miRNA: 3'- -GGCG-GUGGCGUCacAUGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 86813 | 0.68 | 0.892312 |
Target: 5'- uCCGCUGCCGCuGUGUcGgCCGacuUCAGAu -3' miRNA: 3'- -GGCGGUGGCGuCACA-UgGGC---AGUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 95542 | 0.68 | 0.885478 |
Target: 5'- gCGCCGCCGCGa--UACCCuUCGAAGc -3' miRNA: 3'- gGCGGUGGCGUcacAUGGGcAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 394 | 0.68 | 0.871134 |
Target: 5'- gCGCCGgCGCGgucGUGUACCUGUUc--- -3' miRNA: 3'- gGCGGUgGCGU---CACAUGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 154535 | 0.68 | 0.863633 |
Target: 5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3' miRNA: 3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 24292 | 0.68 | 0.863633 |
Target: 5'- cCCGCCGCaCGCGGUuacauccacgGUGCCgagCGUUGAAGg -3' miRNA: 3'- -GGCGGUG-GCGUCA----------CAUGG---GCAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 35508 | 0.68 | 0.863633 |
Target: 5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3' miRNA: 3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 79141 | 0.69 | 0.855921 |
Target: 5'- gCCGCCACCGCAuuucGUGUACUacaCGcgCGGc- -3' miRNA: 3'- -GGCGGUGGCGU----CACAUGG---GCa-GUUuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 143745 | 0.69 | 0.831582 |
Target: 5'- gCGCCGCCGCGGUGcaguCCUGg----- -3' miRNA: 3'- gGCGGUGGCGUCACau--GGGCaguuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 79719 | 0.7 | 0.814426 |
Target: 5'- gCGCCuCCGCGGccuugGcGCCCGUCGGc- -3' miRNA: 3'- gGCGGuGGCGUCa----CaUGGGCAGUUuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 102269 | 0.7 | 0.787456 |
Target: 5'- aCGCCGCCGCGGUaauCaaggaCGUCAGGAc -3' miRNA: 3'- gGCGGUGGCGUCAcauGg----GCAGUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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