miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24457 5' -54.7 NC_005264.1 + 394 0.68 0.871134
Target:  5'- gCGCCGgCGCGgucGUGUACCUGUUc--- -3'
miRNA:   3'- gGCGGUgGCGU---CACAUGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 2722 0.66 0.947586
Target:  5'- -gGCCGcCCGCGGccggGCCCGUCu--- -3'
miRNA:   3'- ggCGGU-GGCGUCaca-UGGGCAGuuuu -5'
24457 5' -54.7 NC_005264.1 + 4162 0.67 0.910812
Target:  5'- gCCGCCcacGCCGCGGUGUGgggaagcggagggUCCGagGGAc -3'
miRNA:   3'- -GGCGG---UGGCGUCACAU-------------GGGCagUUUu -5'
24457 5' -54.7 NC_005264.1 + 5152 0.65 0.955385
Target:  5'- gCGUCGCCGUcgucgucGGUGccgGCCuCGUCGGAc -3'
miRNA:   3'- gGCGGUGGCG-------UCACa--UGG-GCAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 7997 0.66 0.933531
Target:  5'- gCCGCCAUUGCGGg--GCCgG-CAGAGg -3'
miRNA:   3'- -GGCGGUGGCGUCacaUGGgCaGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 16479 0.66 0.94314
Target:  5'- aCGCaGCCGCGGUG-GCCUgcgggGUCGAGg -3'
miRNA:   3'- gGCGgUGGCGUCACaUGGG-----CAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 16933 0.67 0.922957
Target:  5'- cCCGCCGCCGgAGcUGUuccaGCUCGcCAGc- -3'
miRNA:   3'- -GGCGGUGGCgUC-ACA----UGGGCaGUUuu -5'
24457 5' -54.7 NC_005264.1 + 24292 0.68 0.863633
Target:  5'- cCCGCCGCaCGCGGUuacauccacgGUGCCgagCGUUGAAGg -3'
miRNA:   3'- -GGCGGUG-GCGUCA----------CAUGG---GCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 33247 0.66 0.933531
Target:  5'- gCCGCCgcGCCGCAGc--GCCUG-CAGAGc -3'
miRNA:   3'- -GGCGG--UGGCGUCacaUGGGCaGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 35008 0.67 0.917306
Target:  5'- gCCgGCCGCCGCGGaGgcaACgCUGUCGGGAg -3'
miRNA:   3'- -GG-CGGUGGCGUCaCa--UG-GGCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 35508 0.68 0.863633
Target:  5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3'
miRNA:   3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 37390 0.67 0.911415
Target:  5'- aCGCCGCCGCgagAGUGUACgUGg----- -3'
miRNA:   3'- gGCGGUGGCG---UCACAUGgGCaguuuu -5'
24457 5' -54.7 NC_005264.1 + 39365 0.67 0.905284
Target:  5'- gCgGCCACCGCA---UGCCCGUaCAu-- -3'
miRNA:   3'- -GgCGGUGGCGUcacAUGGGCA-GUuuu -5'
24457 5' -54.7 NC_005264.1 + 45809 0.71 0.759213
Target:  5'- gCCGCCGCgcugauCGCGcUGUACUCGUCAu-- -3'
miRNA:   3'- -GGCGGUG------GCGUcACAUGGGCAGUuuu -5'
24457 5' -54.7 NC_005264.1 + 48354 0.66 0.946715
Target:  5'- aCGCCAUgGCGGccucguugcgcaGUGCCgCGUCGAGg -3'
miRNA:   3'- gGCGGUGgCGUCa-----------CAUGG-GCAGUUUu -5'
24457 5' -54.7 NC_005264.1 + 55906 0.66 0.947152
Target:  5'- gCgGCCGCCGCAGcUGUcgaggaaaaagugACCCGg----- -3'
miRNA:   3'- -GgCGGUGGCGUC-ACA-------------UGGGCaguuuu -5'
24457 5' -54.7 NC_005264.1 + 59405 0.66 0.951795
Target:  5'- aCGCUGuCC-CAGUcGUGCCUGUCGAu- -3'
miRNA:   3'- gGCGGU-GGcGUCA-CAUGGGCAGUUuu -5'
24457 5' -54.7 NC_005264.1 + 69016 0.68 0.892312
Target:  5'- gUCGCCAUCGUAcUGUGCCacggcgaGUCGAu- -3'
miRNA:   3'- -GGCGGUGGCGUcACAUGGg------CAGUUuu -5'
24457 5' -54.7 NC_005264.1 + 70360 1.09 0.004201
Target:  5'- aCCGCCACCGCAGUGUACCCGUCAAAAg -3'
miRNA:   3'- -GGCGGUGGCGUCACAUGGGCAGUUUU- -5'
24457 5' -54.7 NC_005264.1 + 78643 0.74 0.587122
Target:  5'- aCCGCCGCgGCGGcccUGUGCCuCGUCc--- -3'
miRNA:   3'- -GGCGGUGgCGUC---ACAUGG-GCAGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.