Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24457 | 5' | -54.7 | NC_005264.1 | + | 124179 | 0.65 | 0.955385 |
Target: 5'- gCGUCGCCGUcgucgucGGUGccgGCCuCGUCGGAc -3' miRNA: 3'- gGCGGUGGCG-------UCACa--UGG-GCAGUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 33247 | 0.66 | 0.933531 |
Target: 5'- gCCGCCgcGCCGCAGc--GCCUG-CAGAGc -3' miRNA: 3'- -GGCGG--UGGCGUCacaUGGGCaGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 127024 | 0.66 | 0.933531 |
Target: 5'- gCCGCCAUUGCGGg--GCCgG-CAGAGg -3' miRNA: 3'- -GGCGGUGGCGUCacaUGGgCaGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 147246 | 0.66 | 0.933531 |
Target: 5'- aUGCCggaGCCGCAGcUGcGCCCG-CAAGc -3' miRNA: 3'- gGCGG---UGGCGUC-ACaUGGGCaGUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 89839 | 0.66 | 0.94314 |
Target: 5'- gCGCCAggagcuuuCUGCGGUGUcCCUGUCu--- -3' miRNA: 3'- gGCGGU--------GGCGUCACAuGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 48354 | 0.66 | 0.946715 |
Target: 5'- aCGCCAUgGCGGccucguugcgcaGUGCCgCGUCGAGg -3' miRNA: 3'- gGCGGUGgCGUCa-----------CAUGG-GCAGUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 55906 | 0.66 | 0.947152 |
Target: 5'- gCgGCCGCCGCAGcUGUcgaggaaaaagugACCCGg----- -3' miRNA: 3'- -GgCGGUGGCGUC-ACA-------------UGGGCaguuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 59405 | 0.66 | 0.951795 |
Target: 5'- aCGCUGuCC-CAGUcGUGCCUGUCGAu- -3' miRNA: 3'- gGCGGU-GGcGUCA-CAUGGGCAGUUuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 113467 | 0.66 | 0.951795 |
Target: 5'- aCCGaCC-CCGCGGUcGUGCCacgGUCGc-- -3' miRNA: 3'- -GGC-GGuGGCGUCA-CAUGGg--CAGUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 136839 | 0.67 | 0.928365 |
Target: 5'- -aGCCACgCGCcGauacUGUACCCGUCu--- -3' miRNA: 3'- ggCGGUG-GCGuC----ACAUGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 35008 | 0.67 | 0.917306 |
Target: 5'- gCCgGCCGCCGCGGaGgcaACgCUGUCGGGAg -3' miRNA: 3'- -GG-CGGUGGCGUCaCa--UG-GGCAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 156417 | 0.67 | 0.911415 |
Target: 5'- aCGCCGCCGCgagAGUGUACgUGg----- -3' miRNA: 3'- gGCGGUGGCG---UCACAUGgGCaguuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 79719 | 0.7 | 0.814426 |
Target: 5'- gCGCCuCCGCGGccuugGcGCCCGUCGGc- -3' miRNA: 3'- gGCGGuGGCGUCa----CaUGGGCAGUUuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 154535 | 0.68 | 0.863633 |
Target: 5'- aCGCCGCggCGCAG-GUGCCCccGUCGc-- -3' miRNA: 3'- gGCGGUG--GCGUCaCAUGGG--CAGUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 394 | 0.68 | 0.871134 |
Target: 5'- gCGCCGgCGCGgucGUGUACCUGUUc--- -3' miRNA: 3'- gGCGGUgGCGU---CACAUGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 86813 | 0.68 | 0.892312 |
Target: 5'- uCCGCUGCCGCuGUGUcGgCCGacuUCAGAu -3' miRNA: 3'- -GGCGGUGGCGuCACA-UgGGC---AGUUUu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 102692 | 0.68 | 0.892312 |
Target: 5'- gCCGCgCACCGUAGgcUGCUCGUCc--- -3' miRNA: 3'- -GGCG-GUGGCGUCacAUGGGCAGuuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 146369 | 0.68 | 0.898915 |
Target: 5'- -gGCCACCGCGGc-UGCgUCGUCGGAAc -3' miRNA: 3'- ggCGGUGGCGUCacAUG-GGCAGUUUU- -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 39365 | 0.67 | 0.905284 |
Target: 5'- gCgGCCACCGCA---UGCCCGUaCAu-- -3' miRNA: 3'- -GgCGGUGGCGUcacAUGGGCA-GUuuu -5' |
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24457 | 5' | -54.7 | NC_005264.1 | + | 123189 | 0.67 | 0.910812 |
Target: 5'- gCCGCCcacGCCGCGGUGUGgggaagcggagggUCCGagGGAc -3' miRNA: 3'- -GGCGG---UGGCGUCACAU-------------GGGCagUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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