miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 3' -51.8 NC_005264.1 + 125724 0.66 0.988079
Target:  5'- -uGCCC-CUGugGAaCGAGUaguUG-GGCg -3'
miRNA:   3'- guCGGGaGAUugCUaGCUCA---ACuCCG- -5'
24458 3' -51.8 NC_005264.1 + 149425 0.66 0.986502
Target:  5'- uGGgCCUUUGGCuGuugcUCGGGUUGAcGGCg -3'
miRNA:   3'- gUCgGGAGAUUG-Cu---AGCUCAACU-CCG- -5'
24458 3' -51.8 NC_005264.1 + 4692 0.66 0.986502
Target:  5'- aAGCUgCUCUgcGACGuucUCGGG-UGAGGCc -3'
miRNA:   3'- gUCGG-GAGA--UUGCu--AGCUCaACUCCG- -5'
24458 3' -51.8 NC_005264.1 + 11337 0.66 0.986502
Target:  5'- -uGUCCUCUAGCGccaCGAGUUGc-GCu -3'
miRNA:   3'- guCGGGAGAUUGCua-GCUCAACucCG- -5'
24458 3' -51.8 NC_005264.1 + 28002 0.67 0.980798
Target:  5'- gCGGCCCaUCgauccagguCGGUCGGGggcggGAGGUc -3'
miRNA:   3'- -GUCGGG-AGauu------GCUAGCUCaa---CUCCG- -5'
24458 3' -51.8 NC_005264.1 + 91853 0.67 0.980581
Target:  5'- gCAGCCC-CUGcgaccgggcgacaAUGGUCGAGguagcGGGGUg -3'
miRNA:   3'- -GUCGGGaGAU-------------UGCUAGCUCaa---CUCCG- -5'
24458 3' -51.8 NC_005264.1 + 121889 0.67 0.978546
Target:  5'- -cGCCCgCUGcggcuGCGAUCGAcc-GGGGCg -3'
miRNA:   3'- guCGGGaGAU-----UGCUAGCUcaaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 2863 0.67 0.978546
Target:  5'- -cGCCCgCUGcggcuGCGAUCGAcc-GGGGCg -3'
miRNA:   3'- guCGGGaGAU-----UGCUAGCUcaaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 54242 0.67 0.976103
Target:  5'- gCGGCCCcgCgcgccAACGuGUCGAGUgggagcGGGGCg -3'
miRNA:   3'- -GUCGGGa-Ga----UUGC-UAGCUCAa-----CUCCG- -5'
24458 3' -51.8 NC_005264.1 + 141606 0.69 0.944425
Target:  5'- -cGCCCUCaUGACGuccaaAUCGcGGUcGGGGCa -3'
miRNA:   3'- guCGGGAG-AUUGC-----UAGC-UCAaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 39808 0.7 0.929593
Target:  5'- aAGCCC-CUggUGggCGAG--GAGGCa -3'
miRNA:   3'- gUCGGGaGAuuGCuaGCUCaaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 158834 0.7 0.929593
Target:  5'- aAGCCC-CUggUGggCGAG--GAGGCa -3'
miRNA:   3'- gUCGGGaGAuuGCuaGCUCaaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 69764 0.7 0.924149
Target:  5'- uGGCCCUgccACGAauUCGGGcgGAGGCc -3'
miRNA:   3'- gUCGGGAgauUGCU--AGCUCaaCUCCG- -5'
24458 3' -51.8 NC_005264.1 + 160172 0.7 0.90632
Target:  5'- -uGCCCUC--GCGGUCGGGgccaGAGGa -3'
miRNA:   3'- guCGGGAGauUGCUAGCUCaa--CUCCg -5'
24458 3' -51.8 NC_005264.1 + 41145 0.7 0.90632
Target:  5'- -uGCCCUC--GCGGUCGGGgccaGAGGa -3'
miRNA:   3'- guCGGGAGauUGCUAGCUCaa--CUCCg -5'
24458 3' -51.8 NC_005264.1 + 118920 0.72 0.831572
Target:  5'- uGGCCCUC-GACG-UCGAGgcGAcGGCc -3'
miRNA:   3'- gUCGGGAGaUUGCuAGCUCaaCU-CCG- -5'
24458 3' -51.8 NC_005264.1 + 121285 0.74 0.738141
Target:  5'- cCAGCCCccaaacacgucUCUGuacuuuACGGUCGAGaacgUGGGGCu -3'
miRNA:   3'- -GUCGGG-----------AGAU------UGCUAGCUCa---ACUCCG- -5'
24458 3' -51.8 NC_005264.1 + 110854 0.74 0.728106
Target:  5'- aCGGUCCUCUcGGCGAagaUCGAGcgUGAGcGCg -3'
miRNA:   3'- -GUCGGGAGA-UUGCU---AGCUCa-ACUC-CG- -5'
24458 3' -51.8 NC_005264.1 + 69798 1.12 0.005338
Target:  5'- aCAGCCCUCUAACGAUCGAGUUGAGGCc -3'
miRNA:   3'- -GUCGGGAGAUUGCUAGCUCAACUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.