miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 123141 0.66 0.747122
Target:  5'- -gGCCgaGGgUGUCCCCuCUgccaaacACGGCCg -3'
miRNA:   3'- gaCGGaaCUgACGGGGGcGA-------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 56852 0.66 0.775774
Target:  5'- gCUGCCa-GAUUGCUCCUgggggccaugGCUA-GGCCa -3'
miRNA:   3'- -GACGGaaCUGACGGGGG----------CGAUgCCGG- -5'
24458 5' -59.9 NC_005264.1 + 76258 0.66 0.748062
Target:  5'- -aGCCgUGACUGCggUCGCcACGGCa -3'
miRNA:   3'- gaCGGaACUGACGggGGCGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 72317 0.66 0.766647
Target:  5'- -gGCgUUGGCgguuugGCCUUCGUcgAUGGCCg -3'
miRNA:   3'- gaCGgAACUGa-----CGGGGGCGa-UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 124880 0.66 0.766647
Target:  5'- gUGCCgcgcaacUGGCUaaccGCCCCC-CcAUGGCCu -3'
miRNA:   3'- gACGGa------ACUGA----CGGGGGcGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 114992 0.66 0.766647
Target:  5'- -gGCC----CUGCCCCCGCcACGGg- -3'
miRNA:   3'- gaCGGaacuGACGGGGGCGaUGCCgg -5'
24458 5' -59.9 NC_005264.1 + 94906 0.66 0.774867
Target:  5'- -cGCCggGAa---CCCCGCUacacgacuuuuauGCGGCCg -3'
miRNA:   3'- gaCGGaaCUgacgGGGGCGA-------------UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 107478 0.67 0.719485
Target:  5'- -cGCC--GACgcGgCCCgGCUAUGGCCa -3'
miRNA:   3'- gaCGGaaCUGa-CgGGGgCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 19864 0.67 0.719485
Target:  5'- -cGCCUca--UGCCCgagagaCCGCcGCGGCCg -3'
miRNA:   3'- gaCGGAacugACGGG------GGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 52672 0.67 0.709806
Target:  5'- aUGCCagGAUagGCCCCaaaGCcGCGGCg -3'
miRNA:   3'- gACGGaaCUGa-CGGGGg--CGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 64357 0.67 0.719485
Target:  5'- -cGCUgagGAgaUGCCCUCGCgcgugcCGGCCg -3'
miRNA:   3'- gaCGGaa-CUg-ACGGGGGCGau----GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 66403 0.67 0.69027
Target:  5'- -gGUCUUGcuGCUGCacuaCCUGCU-UGGCCa -3'
miRNA:   3'- gaCGGAAC--UGACGg---GGGCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160142 0.67 0.709806
Target:  5'- uUGCCaucUGGCUGCaagcaagagCCCGCUuGCGGaCCc -3'
miRNA:   3'- gACGGa--ACUGACGg--------GGGCGA-UGCC-GG- -5'
24458 5' -59.9 NC_005264.1 + 41424 0.67 0.700065
Target:  5'- -gGCC--GGCgccggGCUCCUGCgggcgACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa----CGGGGGCGa----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160451 0.67 0.700065
Target:  5'- -gGCC--GGCgccggGCUCCUGCgggcgACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa----CGGGGGCGa----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 23391 0.67 0.670551
Target:  5'- -cGCC-UGGCcGCCCUCuuGUgACGGCCg -3'
miRNA:   3'- gaCGGaACUGaCGGGGG--CGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 146663 0.67 0.670551
Target:  5'- aUGCCgcGACcGaCCUCCGCgcaggGCGGCa -3'
miRNA:   3'- gACGGaaCUGaC-GGGGGCGa----UGCCGg -5'
24458 5' -59.9 NC_005264.1 + 128980 0.68 0.640771
Target:  5'- -cGCCggcgaggGACUGCCggaCCCG-UGCGGCg -3'
miRNA:   3'- gaCGGaa-----CUGACGG---GGGCgAUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 147253 0.68 0.650715
Target:  5'- -aGCCgcaGCUGCgCCCGCaagcuUGGCCa -3'
miRNA:   3'- gaCGGaacUGACGgGGGCGau---GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 125265 0.68 0.640771
Target:  5'- -cGCCgcgaGACUugccGCCUCCGUcGCGGUCg -3'
miRNA:   3'- gaCGGaa--CUGA----CGGGGGCGaUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.