miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24458 5' -59.9 NC_005264.1 + 149478 0.66 0.738621
Target:  5'- -aGCCgcgg--GCCCCgGCU-CGGCCc -3'
miRNA:   3'- gaCGGaacugaCGGGGgCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 50517 0.66 0.729092
Target:  5'- uCUGCCUUGGucgaUGUCUCugCGCUGCcaagaGGCCu -3'
miRNA:   3'- -GACGGAACUg---ACGGGG--GCGAUG-----CCGG- -5'
24458 5' -59.9 NC_005264.1 + 52244 0.66 0.729092
Target:  5'- uCUGCUcgGg--GCCCCCGCcuacucaccCGGCCa -3'
miRNA:   3'- -GACGGaaCugaCGGGGGCGau-------GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 107739 0.66 0.729092
Target:  5'- gUGgCUUGGgcaaguugcgagUUGCCUCCGCgucaAUGGCCu -3'
miRNA:   3'- gACgGAACU------------GACGGGGGCGa---UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 42371 0.66 0.729092
Target:  5'- -gGCCgguGCUGgCUCCCGCggaGGCCc -3'
miRNA:   3'- gaCGGaacUGAC-GGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 161398 0.66 0.729092
Target:  5'- -gGCCgguGCUGgCUCCCGCggaGGCCc -3'
miRNA:   3'- gaCGGaacUGAC-GGGGGCGaugCCGG- -5'
24458 5' -59.9 NC_005264.1 + 109748 0.66 0.728135
Target:  5'- -cGCCUUGuccaccaGCUuagacaCUCCCGCUgguccGCGGCCa -3'
miRNA:   3'- gaCGGAAC-------UGAc-----GGGGGCGA-----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 19864 0.67 0.719485
Target:  5'- -cGCCUca--UGCCCgagagaCCGCcGCGGCCg -3'
miRNA:   3'- gaCGGAacugACGGG------GGCGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 107478 0.67 0.719485
Target:  5'- -cGCC--GACgcGgCCCgGCUAUGGCCa -3'
miRNA:   3'- gaCGGaaCUGa-CgGGGgCGAUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 64357 0.67 0.719485
Target:  5'- -cGCUgagGAgaUGCCCUCGCgcgugcCGGCCg -3'
miRNA:   3'- gaCGGaa-CUg-ACGGGGGCGau----GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160142 0.67 0.709806
Target:  5'- uUGCCaucUGGCUGCaagcaagagCCCGCUuGCGGaCCc -3'
miRNA:   3'- gACGGa--ACUGACGg--------GGGCGA-UGCC-GG- -5'
24458 5' -59.9 NC_005264.1 + 52672 0.67 0.709806
Target:  5'- aUGCCagGAUagGCCCCaaaGCcGCGGCg -3'
miRNA:   3'- gACGGaaCUGa-CGGGGg--CGaUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 41424 0.67 0.700065
Target:  5'- -gGCC--GGCgccggGCUCCUGCgggcgACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa----CGGGGGCGa----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 160451 0.67 0.700065
Target:  5'- -gGCC--GGCgccggGCUCCUGCgggcgACGGCCa -3'
miRNA:   3'- gaCGGaaCUGa----CGGGGGCGa----UGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 66403 0.67 0.69027
Target:  5'- -gGUCUUGcuGCUGCacuaCCUGCU-UGGCCa -3'
miRNA:   3'- gaCGGAAC--UGACGg---GGGCGAuGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 146663 0.67 0.670551
Target:  5'- aUGCCgcGACcGaCCUCCGCgcaggGCGGCa -3'
miRNA:   3'- gACGGaaCUGaC-GGGGGCGa----UGCCGg -5'
24458 5' -59.9 NC_005264.1 + 23391 0.67 0.670551
Target:  5'- -cGCC-UGGCcGCCCUCuuGUgACGGCCg -3'
miRNA:   3'- gaCGGaACUGaCGGGGG--CGaUGCCGG- -5'
24458 5' -59.9 NC_005264.1 + 147253 0.68 0.650715
Target:  5'- -aGCCgcaGCUGCgCCCGCaagcuUGGCCa -3'
miRNA:   3'- gaCGGaacUGACGgGGGCGau---GCCGG- -5'
24458 5' -59.9 NC_005264.1 + 78063 0.68 0.64475
Target:  5'- gUGCCgucUGuaucuauagcuccgcGCUGCCCgUCGUUGCGGCa -3'
miRNA:   3'- gACGGa--AC---------------UGACGGG-GGCGAUGCCGg -5'
24458 5' -59.9 NC_005264.1 + 128980 0.68 0.640771
Target:  5'- -cGCCggcgaggGACUGCCggaCCCG-UGCGGCg -3'
miRNA:   3'- gaCGGaa-----CUGACGG---GGGCgAUGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.