miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24459 3' -63.9 NC_005264.1 + 1144 0.66 0.584564
Target:  5'- gGCGCacgggacgaucCGGCCGCCAGUcugccGGCGCgcgaUgGGGg -3'
miRNA:   3'- -CGCG-----------GCCGGCGGUCG-----UCGCGg---AgUCU- -5'
24459 3' -63.9 NC_005264.1 + 149885 0.66 0.584564
Target:  5'- gGCGgCGcGCCGCCcgguaGGCaacGGCGUCUCGa- -3'
miRNA:   3'- -CGCgGC-CGGCGG-----UCG---UCGCGGAGUcu -5'
24459 3' -63.9 NC_005264.1 + 59755 0.66 0.584564
Target:  5'- gGCGgCGGCUGCgAcGCGGaCGCUUCGcGGg -3'
miRNA:   3'- -CGCgGCCGGCGgU-CGUC-GCGGAGU-CU- -5'
24459 3' -63.9 NC_005264.1 + 98504 0.66 0.584564
Target:  5'- cUGCCGGaggCGCCGacGgGGgGCCUCAGu -3'
miRNA:   3'- cGCGGCCg--GCGGU--CgUCgCGGAGUCu -5'
24459 3' -63.9 NC_005264.1 + 30859 0.66 0.584564
Target:  5'- gGCGgCGcGCCGCCcgguaGGCaacGGCGUCUCGa- -3'
miRNA:   3'- -CGCgGC-CGGCGG-----UCG---UCGCGGAGUcu -5'
24459 3' -63.9 NC_005264.1 + 120171 0.66 0.584564
Target:  5'- gGCGCacgggacgaucCGGCCGCCAGUcugccGGCGCgcgaUgGGGg -3'
miRNA:   3'- -CGCG-----------GCCGGCGGUCG-----UCGCGg---AgUCU- -5'
24459 3' -63.9 NC_005264.1 + 106031 0.66 0.583599
Target:  5'- uGCGCC-GCCGaccgacaCCGGCGauGCGCCUCc-- -3'
miRNA:   3'- -CGCGGcCGGC-------GGUCGU--CGCGGAGucu -5'
24459 3' -63.9 NC_005264.1 + 136360 0.66 0.57493
Target:  5'- gGCGCUGggcGCUGCCGGCgcgaauAGCGCUgUGGAg -3'
miRNA:   3'- -CGCGGC---CGGCGGUCG------UCGCGGaGUCU- -5'
24459 3' -63.9 NC_005264.1 + 61812 0.66 0.57493
Target:  5'- cCGCgGGCauCGCCgGGCAGUGCCUg--- -3'
miRNA:   3'- cGCGgCCG--GCGG-UCGUCGCGGAgucu -5'
24459 3' -63.9 NC_005264.1 + 94519 0.66 0.57493
Target:  5'- cCGUCGGCCacgugggagGgCAGCGGCGCCgcaCuGAg -3'
miRNA:   3'- cGCGGCCGG---------CgGUCGUCGCGGa--GuCU- -5'
24459 3' -63.9 NC_005264.1 + 83622 0.66 0.57493
Target:  5'- cCGCC-GCCGCCugcacGCAGCcuaGCCcCAGGg -3'
miRNA:   3'- cGCGGcCGGCGGu----CGUCG---CGGaGUCU- -5'
24459 3' -63.9 NC_005264.1 + 22235 0.66 0.57493
Target:  5'- uCGUCGGCgGUCugGGCGGuCGCCUCu-- -3'
miRNA:   3'- cGCGGCCGgCGG--UCGUC-GCGGAGucu -5'
24459 3' -63.9 NC_005264.1 + 96376 0.66 0.57493
Target:  5'- -aGuCUGGCCG-CGGCGGUGCCaucuccccaUCGGAa -3'
miRNA:   3'- cgC-GGCCGGCgGUCGUCGCGG---------AGUCU- -5'
24459 3' -63.9 NC_005264.1 + 31756 0.66 0.565333
Target:  5'- gGCGUCGcUCGCCaucacGGCaaauAGCGUCUCGGAc -3'
miRNA:   3'- -CGCGGCcGGCGG-----UCG----UCGCGGAGUCU- -5'
24459 3' -63.9 NC_005264.1 + 77752 0.66 0.565333
Target:  5'- uCGCCGGCCaCCAcaaacgguGCGGCGgaCCUgGGGa -3'
miRNA:   3'- cGCGGCCGGcGGU--------CGUCGC--GGAgUCU- -5'
24459 3' -63.9 NC_005264.1 + 146962 0.66 0.565333
Target:  5'- gGCGCUgaGGCCGCaggcuGCGGaGCCUCcucgAGAa -3'
miRNA:   3'- -CGCGG--CCGGCGgu---CGUCgCGGAG----UCU- -5'
24459 3' -63.9 NC_005264.1 + 81336 0.66 0.564376
Target:  5'- -aGCCGcuucCCGCCAggcuaucugguauGCAGaGCCUCGGAc -3'
miRNA:   3'- cgCGGCc---GGCGGU-------------CGUCgCGGAGUCU- -5'
24459 3' -63.9 NC_005264.1 + 156422 0.66 0.564376
Target:  5'- aGUGCCuGCgGCUGGCGGCggugaucGCCUCGa- -3'
miRNA:   3'- -CGCGGcCGgCGGUCGUCG-------CGGAGUcu -5'
24459 3' -63.9 NC_005264.1 + 16854 0.66 0.559595
Target:  5'- cCGCCaGCCGCCGcGCAguucguauucGCGCCggcgaaggucgcagCAGAg -3'
miRNA:   3'- cGCGGcCGGCGGU-CGU----------CGCGGa-------------GUCU- -5'
24459 3' -63.9 NC_005264.1 + 19746 0.66 0.555778
Target:  5'- uCGCCGuGCCcCCAGCAucGCGCCgc-GAu -3'
miRNA:   3'- cGCGGC-CGGcGGUCGU--CGCGGaguCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.