miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24459 5' -54.2 NC_005264.1 + 121910 0.66 0.961005
Target:  5'- --aCCGGGgcGCGgcGcGGCGGGgaGGGCg -3'
miRNA:   3'- uaaGGUCUa-UGCuaC-CCGCCCa-UCCG- -5'
24459 5' -54.2 NC_005264.1 + 2884 0.66 0.961005
Target:  5'- --aCCGGGgcGCGgcGcGGCGGGgaGGGCg -3'
miRNA:   3'- uaaGGUCUa-UGCuaC-CCGCCCa-UCCG- -5'
24459 5' -54.2 NC_005264.1 + 16481 0.66 0.961005
Target:  5'- ---gCAGccGCGGUGGccuGCGGGgucgAGGCa -3'
miRNA:   3'- uaagGUCuaUGCUACC---CGCCCa---UCCG- -5'
24459 5' -54.2 NC_005264.1 + 31518 0.66 0.953411
Target:  5'- -cUCCAGGcucggGCGGggaGGGCcguugGGGUGGGg -3'
miRNA:   3'- uaAGGUCUa----UGCUa--CCCG-----CCCAUCCg -5'
24459 5' -54.2 NC_005264.1 + 150545 0.66 0.953411
Target:  5'- -cUCCAGGcucggGCGGggaGGGCcguugGGGUGGGg -3'
miRNA:   3'- uaAGGUCUa----UGCUa--CCCG-----CCCAUCCg -5'
24459 5' -54.2 NC_005264.1 + 18900 0.66 0.953411
Target:  5'- -cUCCGGcu----UGGGCuGGUAGGCa -3'
miRNA:   3'- uaAGGUCuaugcuACCCGcCCAUCCG- -5'
24459 5' -54.2 NC_005264.1 + 110574 0.66 0.949264
Target:  5'- cAUUgUAGAUGCcGUGGcCGGGUgaguAGGCg -3'
miRNA:   3'- -UAAgGUCUAUGcUACCcGCCCA----UCCG- -5'
24459 5' -54.2 NC_005264.1 + 151857 0.66 0.94488
Target:  5'- -cUCCGGcgGCGAcacgUGGGgGGcGUcuucgcGGGCa -3'
miRNA:   3'- uaAGGUCuaUGCU----ACCCgCC-CA------UCCG- -5'
24459 5' -54.2 NC_005264.1 + 81892 0.67 0.93027
Target:  5'- --gCCuuGGcgGCGAUGGGCGGGcgAGccaGCa -3'
miRNA:   3'- uaaGG--UCuaUGCUACCCGCCCa-UC---CG- -5'
24459 5' -54.2 NC_005264.1 + 104866 0.67 0.93027
Target:  5'- --gCCAGAUugGAUGcGGCagcuuuccGGGaacAGGCc -3'
miRNA:   3'- uaaGGUCUAugCUAC-CCG--------CCCa--UCCG- -5'
24459 5' -54.2 NC_005264.1 + 82106 0.67 0.913454
Target:  5'- --cCCAcGAUccGCGAaGGGCGGGacucgAGGUa -3'
miRNA:   3'- uaaGGU-CUA--UGCUaCCCGCCCa----UCCG- -5'
24459 5' -54.2 NC_005264.1 + 14042 0.67 0.913454
Target:  5'- -gUCCGGAcgUGGcgGGGcCGGGUGGGa -3'
miRNA:   3'- uaAGGUCUauGCUa-CCC-GCCCAUCCg -5'
24459 5' -54.2 NC_005264.1 + 31180 0.68 0.90736
Target:  5'- --gCCGGAggGCGAgcgagUGGGaCGGG-GGGCu -3'
miRNA:   3'- uaaGGUCUa-UGCU-----ACCC-GCCCaUCCG- -5'
24459 5' -54.2 NC_005264.1 + 150207 0.68 0.90736
Target:  5'- --gCCGGAggGCGAgcgagUGGGaCGGG-GGGCu -3'
miRNA:   3'- uaaGGUCUa-UGCU-----ACCC-GCCCaUCCG- -5'
24459 5' -54.2 NC_005264.1 + 153677 0.68 0.901025
Target:  5'- --gCCAGAgAUGAagGGGCGGGggucucuggaGGGCu -3'
miRNA:   3'- uaaGGUCUaUGCUa-CCCGCCCa---------UCCG- -5'
24459 5' -54.2 NC_005264.1 + 81802 0.68 0.901025
Target:  5'- --gCCAGugAgGGUagacGGCGGGUAGGCg -3'
miRNA:   3'- uaaGGUCuaUgCUAc---CCGCCCAUCCG- -5'
24459 5' -54.2 NC_005264.1 + 74256 0.68 0.901025
Target:  5'- -cUCCAGAcacgGCGGUaGaGGCGGGgccucauauGGCa -3'
miRNA:   3'- uaAGGUCUa---UGCUA-C-CCGCCCau-------CCG- -5'
24459 5' -54.2 NC_005264.1 + 49604 0.68 0.89445
Target:  5'- --aCCAGGacgACGggGGGCGcucGGUGGGg -3'
miRNA:   3'- uaaGGUCUa--UGCuaCCCGC---CCAUCCg -5'
24459 5' -54.2 NC_005264.1 + 19429 0.69 0.850214
Target:  5'- --gCCGGGUguggccGCGG-GGcGCGGGUGGGUu -3'
miRNA:   3'- uaaGGUCUA------UGCUaCC-CGCCCAUCCG- -5'
24459 5' -54.2 NC_005264.1 + 3607 0.7 0.807732
Target:  5'- --gCCGuGGUggACGGUGGGCGcuGUGGGCg -3'
miRNA:   3'- uaaGGU-CUA--UGCUACCCGCc-CAUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.