miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 123167 0.66 0.893155
Target:  5'- aCugGUCAGCaauGAUCuCGCagAGUuguacuuggacgaggCCGCGCg -3'
miRNA:   3'- -GugCAGUCG---CUAGcGCG--UCA---------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 66496 0.66 0.890536
Target:  5'- -cCGUgcCGGCGAUgGCGCGGUacagcgaGCGUg -3'
miRNA:   3'- guGCA--GUCGCUAgCGCGUCAgg-----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 136553 0.66 0.890536
Target:  5'- aCGCGggAGcCGAUCGCGaucCAGgaaCGCGCc -3'
miRNA:   3'- -GUGCagUC-GCUAGCGC---GUCag-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 46868 0.66 0.890536
Target:  5'- gGCGuUCAGCGucccuGUCGgGCg--CCGCGUa -3'
miRNA:   3'- gUGC-AGUCGC-----UAGCgCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 158053 0.66 0.883837
Target:  5'- --aGUCGGUGGaggUGCGCGaacGgcgCCGCGCa -3'
miRNA:   3'- gugCAGUCGCUa--GCGCGU---Ca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 26293 0.66 0.883837
Target:  5'- uCGCGaUCGGCuccCGCGUcuucGUCCGCGUc -3'
miRNA:   3'- -GUGC-AGUCGcuaGCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 1190 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 68488 0.66 0.883837
Target:  5'- gGCGgcugUAGCGGUCGaGCA--CUGCGCg -3'
miRNA:   3'- gUGCa---GUCGCUAGCgCGUcaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 97369 0.66 0.883837
Target:  5'- uGCGUgCAuGCGAgcUCGCaggcccGCAGgCCGUGCa -3'
miRNA:   3'- gUGCA-GU-CGCU--AGCG------CGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 131686 0.66 0.883837
Target:  5'- gCACGUCGGCucgcaaGCGUAGcgugggcCUGCGCg -3'
miRNA:   3'- -GUGCAGUCGcuag--CGCGUCa------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 24498 0.66 0.883837
Target:  5'- uCGCGUUcgGGCGccuuGUCGCGCA---CGCGCc -3'
miRNA:   3'- -GUGCAG--UCGC----UAGCGCGUcagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 120217 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 137292 0.66 0.883837
Target:  5'- gACGagcGCGAcaaGCGCcuuGUCCGCGCc -3'
miRNA:   3'- gUGCaguCGCUag-CGCGu--CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 89363 0.66 0.876925
Target:  5'- aCugGg-AGUGGUCaacaaacgGCGCccuGUCCGCGCu -3'
miRNA:   3'- -GugCagUCGCUAG--------CGCGu--CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 47598 0.66 0.876925
Target:  5'- aCGCGUUGGgGGagacUCGCGCGaaCgGCGCg -3'
miRNA:   3'- -GUGCAGUCgCU----AGCGCGUcaGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 9442 0.66 0.876222
Target:  5'- aACGUCcugcaccauuAGCGGuuuccccUCGCGCAacgcUUCGCGCg -3'
miRNA:   3'- gUGCAG----------UCGCU-------AGCGCGUc---AGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.