Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24460 | 3' | -57.5 | NC_005264.1 | + | 9838 | 0.66 | 0.854189 |
Target: 5'- gCACGUUcgcgagagggucaAGCGGccccuaUCggGCGCGGUCCcgGCGCg -3' miRNA: 3'- -GUGCAG-------------UCGCU------AG--CGCGUCAGG--CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 47598 | 0.66 | 0.876925 |
Target: 5'- aCGCGUUGGgGGagacUCGCGCGaaCgGCGCg -3' miRNA: 3'- -GUGCAGUCgCU----AGCGCGUcaGgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 26293 | 0.66 | 0.883837 |
Target: 5'- uCGCGaUCGGCuccCGCGUcuucGUCCGCGUc -3' miRNA: 3'- -GUGC-AGUCGcuaGCGCGu---CAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 13282 | 0.66 | 0.870524 |
Target: 5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3' miRNA: 3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 68488 | 0.66 | 0.883837 |
Target: 5'- gGCGgcugUAGCGGUCGaGCA--CUGCGCg -3' miRNA: 3'- gUGCa---GUCGCUAGCgCGUcaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 54115 | 0.66 | 0.883837 |
Target: 5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3' miRNA: 3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 2497 | 0.66 | 0.854952 |
Target: 5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3' miRNA: 3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 125439 | 0.66 | 0.876222 |
Target: 5'- aGCGaCgAGCGAUUGuUGCGGUCCcucugccGCGCc -3' miRNA: 3'- gUGCaG-UCGCUAGC-GCGUCAGG-------CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 95461 | 0.66 | 0.862477 |
Target: 5'- cCGCGcCGGCGG--GCGCAGcgaGCGCg -3' miRNA: 3'- -GUGCaGUCGCUagCGCGUCaggCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 97369 | 0.66 | 0.883837 |
Target: 5'- uGCGUgCAuGCGAgcUCGCaggcccGCAGgCCGUGCa -3' miRNA: 3'- gUGCA-GU-CGCU--AGCG------CGUCaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 93239 | 0.66 | 0.854952 |
Target: 5'- uCACGccgggCGGCGcccucGUCgGCGC-GUUCGCGCa -3' miRNA: 3'- -GUGCa----GUCGC-----UAG-CGCGuCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 27895 | 0.66 | 0.854952 |
Target: 5'- cCGCGUUGGCuuUCGUGCAGaucggCCGaGCu -3' miRNA: 3'- -GUGCAGUCGcuAGCGCGUCa----GGCgCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 121524 | 0.66 | 0.854952 |
Target: 5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3' miRNA: 3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 136416 | 0.66 | 0.854952 |
Target: 5'- -cCGUCcGCGGUCuCGUAGUCUGagGCg -3' miRNA: 3'- guGCAGuCGCUAGcGCGUCAGGCg-CG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 162664 | 0.66 | 0.854952 |
Target: 5'- gCGCGcCGGCgGGUCGUagguguaCGGUCgGCGCg -3' miRNA: 3'- -GUGCaGUCG-CUAGCGc------GUCAGgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 154505 | 0.66 | 0.869803 |
Target: 5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3' miRNA: 3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 75388 | 0.66 | 0.862477 |
Target: 5'- --aGUC-GUGGUgCGCGCcaccGUCUGCGCg -3' miRNA: 3'- gugCAGuCGCUA-GCGCGu---CAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 17358 | 0.67 | 0.814563 |
Target: 5'- cCGCGgcagCuGGCGGcgGCGCGGUCUGUGUa -3' miRNA: 3'- -GUGCa---G-UCGCUagCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 96342 | 0.67 | 0.814563 |
Target: 5'- -uCGUCgAGCGcgcCGCGCAGcCCGCcaaGCa -3' miRNA: 3'- guGCAG-UCGCua-GCGCGUCaGGCG---CG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 15473 | 0.67 | 0.831245 |
Target: 5'- aCGCGaaagCGGCGAUCGCGgCGGgcaUGgGCc -3' miRNA: 3'- -GUGCa---GUCGCUAGCGC-GUCag-GCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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