miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 68422 1.1 0.002081
Target:  5'- cCACGUCAGCGAUCGCGCAGUCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 6886 0.82 0.149723
Target:  5'- aGCGUCcGCGAgcCGCGCAGUCCcaGCGCg -3'
miRNA:   3'- gUGCAGuCGCUa-GCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 86469 0.76 0.35932
Target:  5'- aCACGUgguUAGCGGguaccaacgcgccugCGCGCAGUcgCCGCGCg -3'
miRNA:   3'- -GUGCA---GUCGCUa--------------GCGCGUCA--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 146882 0.76 0.366355
Target:  5'- aGCGcCAGUGGUUGCGUGGcUCGCGCa -3'
miRNA:   3'- gUGCaGUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 61234 0.75 0.398751
Target:  5'- cCACGUUGGCGAUgGCGCGcUCCagcucacgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCUAgCGCGUcAGG--------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 32909 0.75 0.412213
Target:  5'- uGCGUUcuCGAUCGCGCAGgggucgcggggcgCCGCGUg -3'
miRNA:   3'- gUGCAGucGCUAGCGCGUCa------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 114689 0.74 0.432924
Target:  5'- cCACGccgagCAG-GAUUGCGCGGUCuCGUGCg -3'
miRNA:   3'- -GUGCa----GUCgCUAGCGCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 393 0.74 0.442617
Target:  5'- aGCGcCGGCGcggucguguaccuguUCGCGUAGUCUGUGCg -3'
miRNA:   3'- gUGCaGUCGCu--------------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 100241 0.73 0.495636
Target:  5'- aACGUCcGCGccgcuacuUCGCGCGGucaauuuuaucgaUCCGCGCa -3'
miRNA:   3'- gUGCAGuCGCu-------AGCGCGUC-------------AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128473 0.73 0.496576
Target:  5'- gGCGUCGGCaaguUCGCGCuuggCCGCGUc -3'
miRNA:   3'- gUGCAGUCGcu--AGCGCGuca-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 51780 0.73 0.496576
Target:  5'- uCGCG-CGGCGGcacuUCGUccgGCgAGUCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU----AGCG---CG-UCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 152277 0.72 0.544509
Target:  5'- aACGaggaagcagCGGCGAaCGCGCGaUCCGCGCc -3'
miRNA:   3'- gUGCa--------GUCGCUaGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 76348 0.72 0.544509
Target:  5'- cCGCG-CGGCGAcugCGCGCAGg-CGCGUu -3'
miRNA:   3'- -GUGCaGUCGCUa--GCGCGUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128515 0.72 0.544509
Target:  5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 33250 0.72 0.544509
Target:  5'- aACGaggaagcagCGGCGAaCGCGCGaUCCGCGCc -3'
miRNA:   3'- gUGCa--------GUCGCUaGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 9488 0.72 0.544509
Target:  5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 88995 0.72 0.564113
Target:  5'- -uUGUUGGCuaugcugaGAUCGCGCAGcUCGCGCa -3'
miRNA:   3'- guGCAGUCG--------CUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 30387 0.72 0.564113
Target:  5'- uCGCGUCucGGCGG-CG-GCGGUCgCGCGCc -3'
miRNA:   3'- -GUGCAG--UCGCUaGCgCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149414 0.72 0.564113
Target:  5'- uCGCGUCucGGCGG-CG-GCGGUCgCGCGCc -3'
miRNA:   3'- -GUGCAG--UCGCUaGCgCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 27948 0.71 0.593845
Target:  5'- gCGCGUCGGUGGUCGUGUcgcuuuGGgaaaCGCGUg -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCG------UCag--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.