Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24460 | 3' | -57.5 | NC_005264.1 | + | 48357 | 0.71 | 0.613811 |
Target: 5'- cCAUGgCGGCcucGUUGCGCAGUgCCGCGUc -3' miRNA: 3'- -GUGCaGUCGc--UAGCGCGUCA-GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 99909 | 0.71 | 0.623817 |
Target: 5'- gCGCGgcuuGCGGcCGCGCaAGcCCGCGCg -3' miRNA: 3'- -GUGCagu-CGCUaGCGCG-UCaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 110245 | 0.71 | 0.623817 |
Target: 5'- gCAUGUCAGCcaauccacguaGcgCGCGUAGgcagCCGUGCc -3' miRNA: 3'- -GUGCAGUCG-----------CuaGCGCGUCa---GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 89445 | 0.71 | 0.632828 |
Target: 5'- cUugGUCAGCGggUGUuggcuugGCAGagCCGCGCc -3' miRNA: 3'- -GugCAGUCGCuaGCG-------CGUCa-GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 50813 | 0.7 | 0.64384 |
Target: 5'- ---aUCGGCGcgCGCGCAgGUuuGCGUg -3' miRNA: 3'- gugcAGUCGCuaGCGCGU-CAggCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 74335 | 0.7 | 0.653843 |
Target: 5'- -uCGUCGGUGAUCucagagGCGaugaAGUCCGCGa -3' miRNA: 3'- guGCAGUCGCUAG------CGCg---UCAGGCGCg -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 30613 | 0.7 | 0.653843 |
Target: 5'- gGCGaCGGCGGcgGCGaCGGaUCCGCGCg -3' miRNA: 3'- gUGCaGUCGCUagCGC-GUC-AGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 149640 | 0.7 | 0.653843 |
Target: 5'- gGCGaCGGCGGcgGCGaCGGaUCCGCGCg -3' miRNA: 3'- gUGCaGUCGCUagCGC-GUC-AGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 135154 | 0.7 | 0.659836 |
Target: 5'- aGCGUCGGCGAggcagaggccagcCGCGUaccucGGUCCgaGCGCc -3' miRNA: 3'- gUGCAGUCGCUa------------GCGCG-----UCAGG--CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 15045 | 0.7 | 0.663828 |
Target: 5'- cUACcUCAccucCG-UCGCGCAGUUCGCGCg -3' miRNA: 3'- -GUGcAGUc---GCuAGCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 118062 | 0.7 | 0.673789 |
Target: 5'- gGCGUCGGCaacGAUCGcCGCGGgcaCCuuuggGCGCa -3' miRNA: 3'- gUGCAGUCG---CUAGC-GCGUCa--GG-----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 31030 | 0.7 | 0.673789 |
Target: 5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3' miRNA: 3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 150057 | 0.7 | 0.673789 |
Target: 5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3' miRNA: 3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 60852 | 0.7 | 0.682727 |
Target: 5'- gGCGUCGGCGcgUGCGCggcaaaguuuucuAGUCUcucgGCGUa -3' miRNA: 3'- gUGCAGUCGCuaGCGCG-------------UCAGG----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 86129 | 0.7 | 0.683718 |
Target: 5'- gAUGUCgaAGCGAguugCGcCGCGcUCCGCGCc -3' miRNA: 3'- gUGCAG--UCGCUa---GC-GCGUcAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 30209 | 0.7 | 0.683718 |
Target: 5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3' miRNA: 3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 54910 | 0.7 | 0.683718 |
Target: 5'- gCGCGUCGGCGGUaCGUGagaugaaGGUUauacaGCGCa -3' miRNA: 3'- -GUGCAGUCGCUA-GCGCg------UCAGg----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 149236 | 0.7 | 0.683718 |
Target: 5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3' miRNA: 3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 12131 | 0.7 | 0.693606 |
Target: 5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3' miRNA: 3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 17518 | 0.7 | 0.693606 |
Target: 5'- cCGCGUCAGaCGGUCGUGCucUUCGUuaGCa -3' miRNA: 3'- -GUGCAGUC-GCUAGCGCGucAGGCG--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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