miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 17518 0.7 0.693606
Target:  5'- cCGCGUCAGaCGGUCGUGCucUUCGUuaGCa -3'
miRNA:   3'- -GUGCAGUC-GCUAGCGCGucAGGCG--CG- -5'
24460 3' -57.5 NC_005264.1 + 131158 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 106523 0.69 0.703444
Target:  5'- gCGCGaCGGCGGcaGCGCGG-CCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 12468 0.69 0.703444
Target:  5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3'
miRNA:   3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 131495 0.69 0.703444
Target:  5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3'
miRNA:   3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 1665 0.69 0.711274
Target:  5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3'
miRNA:   3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 120692 0.69 0.711274
Target:  5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3'
miRNA:   3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 30515 0.69 0.713225
Target:  5'- uGCGggaAGCGGcucUCGCGCAGUuuggccgaCCGCGg -3'
miRNA:   3'- gUGCag-UCGCU---AGCGCGUCA--------GGCGCg -5'
24460 3' -57.5 NC_005264.1 + 156684 0.69 0.713225
Target:  5'- aCACGUgCAcGCGAUgCGCGaCGGg-CGCGCg -3'
miRNA:   3'- -GUGCA-GU-CGCUA-GCGC-GUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77401 0.69 0.713225
Target:  5'- gACGcCGGCaa--GCGCucccuGUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGcuagCGCGu----CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 87336 0.69 0.72294
Target:  5'- gCACGcUCGGCGAgCGUGCcccgguAGUCucaaCGCGCg -3'
miRNA:   3'- -GUGC-AGUCGCUaGCGCG------UCAG----GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 106772 0.69 0.72294
Target:  5'- gGCGUCAGCGggCGUGCAGaaCUGUu- -3'
miRNA:   3'- gUGCAGUCGCuaGCGCGUCa-GGCGcg -5'
24460 3' -57.5 NC_005264.1 + 25660 0.69 0.72294
Target:  5'- gUACGUgAGCagcggaacGAUCGCGUAcUCUGCGUg -3'
miRNA:   3'- -GUGCAgUCG--------CUAGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 3306 0.69 0.72294
Target:  5'- uCGCG-CGG-GAUCGCGCg--CCGUGCa -3'
miRNA:   3'- -GUGCaGUCgCUAGCGCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 157686 0.69 0.72294
Target:  5'- gGCuUCGGaCGAUgCgGCGCGG-CCGCGCa -3'
miRNA:   3'- gUGcAGUC-GCUA-G-CGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108466 0.69 0.732581
Target:  5'- cCGCG-CGGgGAUC-CGguGgCCGCGCg -3'
miRNA:   3'- -GUGCaGUCgCUAGcGCguCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54346 0.69 0.732581
Target:  5'- gGCGUUuauGGCGAgccuuagaagcgUCGCGCGGccaccggauccCCGCGCg -3'
miRNA:   3'- gUGCAG---UCGCU------------AGCGCGUCa----------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 139123 0.69 0.732581
Target:  5'- aCACGgCAGCaGAuuguUCGUGUGGcCCGCGUg -3'
miRNA:   3'- -GUGCaGUCG-CU----AGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 107654 0.69 0.742138
Target:  5'- gACGUUucGCGGUCGCcgccuuCAG-CCGCGCc -3'
miRNA:   3'- gUGCAGu-CGCUAGCGc-----GUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 123988 0.69 0.747828
Target:  5'- aCGCGUCaccgacucggcacGGUGccCGCGCAucgucgucguucucGUCCGCGCc -3'
miRNA:   3'- -GUGCAG-------------UCGCuaGCGCGU--------------CAGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.