miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 77302 0.66 0.876222
Target:  5'- aACGUCAGCuucaGGUCGCGggcgAGUugguucauugcccUCGCGCg -3'
miRNA:   3'- gUGCAGUCG----CUAGCGCg---UCA-------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125439 0.66 0.876222
Target:  5'- aGCGaCgAGCGAUUGuUGCGGUCCcucugccGCGCc -3'
miRNA:   3'- gUGCaG-UCGCUAGC-GCGUCAGG-------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 132309 0.66 0.870524
Target:  5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 13282 0.66 0.870524
Target:  5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 24330 0.66 0.869803
Target:  5'- aGCGUUucuucgcgAGUGAaaUCGCGCGGcaaCCGcCGCa -3'
miRNA:   3'- gUGCAG--------UCGCU--AGCGCGUCa--GGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 154505 0.66 0.869803
Target:  5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3'
miRNA:   3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 95461 0.66 0.862477
Target:  5'- cCGCGcCGGCGG--GCGCAGcgaGCGCg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 110896 0.66 0.862477
Target:  5'- aCGCGUUAGCGGcacccUCGCcaAGcUCgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGcgUC-AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 75388 0.66 0.862477
Target:  5'- --aGUC-GUGGUgCGCGCcaccGUCUGCGCg -3'
miRNA:   3'- gugCAGuCGCUA-GCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 2497 0.66 0.854952
Target:  5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3'
miRNA:   3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 136416 0.66 0.854952
Target:  5'- -cCGUCcGCGGUCuCGUAGUCUGagGCg -3'
miRNA:   3'- guGCAGuCGCUAGcGCGUCAGGCg-CG- -5'
24460 3' -57.5 NC_005264.1 + 93239 0.66 0.854952
Target:  5'- uCACGccgggCGGCGcccucGUCgGCGC-GUUCGCGCa -3'
miRNA:   3'- -GUGCa----GUCGC-----UAG-CGCGuCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 27895 0.66 0.854952
Target:  5'- cCGCGUUGGCuuUCGUGCAGaucggCCGaGCu -3'
miRNA:   3'- -GUGCAGUCGcuAGCGCGUCa----GGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 121524 0.66 0.854952
Target:  5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3'
miRNA:   3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 162664 0.66 0.854952
Target:  5'- gCGCGcCGGCgGGUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCG-CUAGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128864 0.66 0.854189
Target:  5'- gCACGUUcgcgagagggucaAGCGGccccuaUCggGCGCGGUCCcgGCGCg -3'
miRNA:   3'- -GUGCAG-------------UCGCU------AG--CGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 9838 0.66 0.854189
Target:  5'- gCACGUUcgcgagagggucaAGCGGccccuaUCggGCGCGGUCCcgGCGCg -3'
miRNA:   3'- -GUGCAG-------------UCGCU------AG--CGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 64970 0.67 0.843305
Target:  5'- aACGUCAGCGugaccacuauucCGCugcggcgcucuacGUAGUCCGCGa -3'
miRNA:   3'- gUGCAGUCGCua----------GCG-------------CGUCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 89088 0.67 0.83933
Target:  5'- uGCGcCAGCGAuaaggccuuauUCGCGUcuuacgAGaacCCGCGCa -3'
miRNA:   3'- gUGCaGUCGCU-----------AGCGCG------UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 37547 0.67 0.83933
Target:  5'- aGCGUCAgGCGAagcgacagCGCGCcG-CCGCGg -3'
miRNA:   3'- gUGCAGU-CGCUa-------GCGCGuCaGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.