miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 55180 0.67 0.83933
Target:  5'- gCGCGgcugaaggCGGCGAcCGCGaaacGUCgGCGCa -3'
miRNA:   3'- -GUGCa-------GUCGCUaGCGCgu--CAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125874 0.67 0.83933
Target:  5'- gGCGcCAGCGcgcaaccucuGUCGUGCGGgcuuguuucUCgGCGCg -3'
miRNA:   3'- gUGCaGUCGC----------UAGCGCGUC---------AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 115179 0.67 0.83933
Target:  5'- aCGCGUCuGCGAUucucacucCGCGaCA-UCCGCGa -3'
miRNA:   3'- -GUGCAGuCGCUA--------GCGC-GUcAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 45033 0.67 0.83933
Target:  5'- gGCGgcaggauggaCGGCGAcgaggaugcCGCGCAGUCCGaGCa -3'
miRNA:   3'- gUGCa---------GUCGCUa--------GCGCGUCAGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 89088 0.67 0.83933
Target:  5'- uGCGcCAGCGAuaaggccuuauUCGCGUcuuacgAGaacCCGCGCa -3'
miRNA:   3'- gUGCaGUCGCU-----------AGCGCG------UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 62724 0.67 0.83933
Target:  5'- gGCGUCGG-GGUa--GUAGUCCGCGa -3'
miRNA:   3'- gUGCAGUCgCUAgcgCGUCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 75105 0.67 0.837727
Target:  5'- gGCGcCGGCGccgagcuGggGCGCAGUcaaauggCCGCGCg -3'
miRNA:   3'- gUGCaGUCGC-------UagCGCGUCA-------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 90810 0.67 0.831245
Target:  5'- gAgGUCAGCcgucUCGCGUguGGcggCCGCGCa -3'
miRNA:   3'- gUgCAGUCGcu--AGCGCG--UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 133963 0.67 0.831245
Target:  5'- gGgGUCuucGCGGUgGCGUucgCCGCGCg -3'
miRNA:   3'- gUgCAGu--CGCUAgCGCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 47859 0.67 0.831245
Target:  5'- aGCGcCGGCa--CGCGCcucaAGUUCGCGCu -3'
miRNA:   3'- gUGCaGUCGcuaGCGCG----UCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 155840 0.67 0.831245
Target:  5'- uCACGUUGGCGccgCcCGCAGggacaaccCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCua-GcGCGUCa-------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 15473 0.67 0.831245
Target:  5'- aCGCGaaagCGGCGAUCGCGgCGGgcaUGgGCc -3'
miRNA:   3'- -GUGCa---GUCGCUAGCGC-GUCag-GCgCG- -5'
24460 3' -57.5 NC_005264.1 + 71851 0.67 0.831245
Target:  5'- aCGCGUC-GCGGcgGCGguGuUCCGCGa -3'
miRNA:   3'- -GUGCAGuCGCUagCGCguC-AGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 74616 0.67 0.831245
Target:  5'- uGCGUagaAGCGAUCuugGCGCGcuaccGUCaGCGCg -3'
miRNA:   3'- gUGCAg--UCGCUAG---CGCGU-----CAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 78682 0.67 0.822987
Target:  5'- gGCGUCuccguAGUGAUCGCGaUGGU-CGUGCu -3'
miRNA:   3'- gUGCAG-----UCGCUAGCGC-GUCAgGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 67019 0.67 0.814563
Target:  5'- gACGgagCGGCGGccUUGCGCAGgcccCCGaCGUa -3'
miRNA:   3'- gUGCa--GUCGCU--AGCGCGUCa---GGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 17358 0.67 0.814563
Target:  5'- cCGCGgcagCuGGCGGcgGCGCGGUCUGUGUa -3'
miRNA:   3'- -GUGCa---G-UCGCUagCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 96342 0.67 0.814563
Target:  5'- -uCGUCgAGCGcgcCGCGCAGcCCGCcaaGCa -3'
miRNA:   3'- guGCAG-UCGCua-GCGCGUCaGGCG---CG- -5'
24460 3' -57.5 NC_005264.1 + 43637 0.67 0.814563
Target:  5'- gCGCGcCGGCGAggUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU--AGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 127339 0.67 0.814563
Target:  5'- uCACGUcCAGCGAuaccaagccgUCGCGauCGG-CCGCGg -3'
miRNA:   3'- -GUGCA-GUCGCU----------AGCGC--GUCaGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.