miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 44122 0.67 0.814563
Target:  5'- gGCGggauagCGGCGAUUacgagcgggaGgGCAGguaagCCGCGCg -3'
miRNA:   3'- gUGCa-----GUCGCUAG----------CgCGUCa----GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 67019 0.67 0.814563
Target:  5'- gACGgagCGGCGGccUUGCGCAGgcccCCGaCGUa -3'
miRNA:   3'- gUGCa--GUCGCU--AGCGCGUCa---GGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 96342 0.67 0.814563
Target:  5'- -uCGUCgAGCGcgcCGCGCAGcCCGCcaaGCa -3'
miRNA:   3'- guGCAG-UCGCua-GCGCGUCaGGCG---CG- -5'
24460 3' -57.5 NC_005264.1 + 152077 0.67 0.812004
Target:  5'- -cUGUCGGCGGUCuGCGCuaccaccugaucGaucaugccgucgguGUCCGCGCc -3'
miRNA:   3'- guGCAGUCGCUAG-CGCG------------U--------------CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 98655 0.68 0.80598
Target:  5'- gACGUCAGaCGAa--CGguGUCgGCGCu -3'
miRNA:   3'- gUGCAGUC-GCUagcGCguCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77323 0.68 0.80598
Target:  5'- aACGcUCAGUGGauggaccggCGUGCAGaCCGCGUc -3'
miRNA:   3'- gUGC-AGUCGCUa--------GCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108805 0.68 0.800757
Target:  5'- gCACGUCGGCaaGAuauguggucuucaagUCGCGCAaGUaggcauccaCGCGCg -3'
miRNA:   3'- -GUGCAGUCG--CU---------------AGCGCGU-CAg--------GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 15283 0.68 0.797246
Target:  5'- aCACGUCGGCGGccacuUCGCGCcgcgggaaAGauUCCGUaucGCu -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGCG--------UC--AGGCG---CG- -5'
24460 3' -57.5 NC_005264.1 + 109986 0.68 0.797246
Target:  5'- gCACGUC-GUaugCGCGCAGcucCCGCGUa -3'
miRNA:   3'- -GUGCAGuCGcuaGCGCGUCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68749 0.68 0.797246
Target:  5'- uUACGUUGG-GGUCGC-CAGUCaCGCGg -3'
miRNA:   3'- -GUGCAGUCgCUAGCGcGUCAG-GCGCg -5'
24460 3' -57.5 NC_005264.1 + 114462 0.68 0.78837
Target:  5'- aACGUCgAGCGccUCGaCGCGGcaCUGCGCa -3'
miRNA:   3'- gUGCAG-UCGCu-AGC-GCGUCa-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125038 0.68 0.78837
Target:  5'- -uCGUCGGCGG-CGCGCcucuucUCCGcCGCu -3'
miRNA:   3'- guGCAGUCGCUaGCGCGuc----AGGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 114725 0.68 0.786578
Target:  5'- gGCGUUugagcaugagccGCGcgCGUGCAGaacCCGCGCg -3'
miRNA:   3'- gUGCAGu-----------CGCuaGCGCGUCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59944 0.68 0.779359
Target:  5'- aGC-UCGGCGGUUaucaUGguGUCCGCGCc -3'
miRNA:   3'- gUGcAGUCGCUAGc---GCguCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 84521 0.68 0.779359
Target:  5'- gGCGaCAGCGAaauguauuUCGCGCuGUuccCCGaCGCa -3'
miRNA:   3'- gUGCaGUCGCU--------AGCGCGuCA---GGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 42528 0.68 0.770222
Target:  5'- gAUGUgUGGCGuggGCGCAGcuUCCGCGCg -3'
miRNA:   3'- gUGCA-GUCGCuagCGCGUC--AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 137387 0.68 0.770222
Target:  5'- cCACGUCGGCGA-CaaGCAGUUCGaggagGCc -3'
miRNA:   3'- -GUGCAGUCGCUaGcgCGUCAGGCg----CG- -5'
24460 3' -57.5 NC_005264.1 + 62639 0.68 0.770222
Target:  5'- cCGCGgagcUCAGCGAagUCGCGCucguAGUUCGC-Ca -3'
miRNA:   3'- -GUGC----AGUCGCU--AGCGCG----UCAGGCGcG- -5'
24460 3' -57.5 NC_005264.1 + 4995 0.68 0.770222
Target:  5'- cCGCGaagaCAGCGAagGgaGCGGUuuGCGCa -3'
miRNA:   3'- -GUGCa---GUCGCUagCg-CGUCAggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59014 0.68 0.760967
Target:  5'- gGCGcUCAGCGaAUCGagcgcaagcccCGCGGUCC-CGCc -3'
miRNA:   3'- gUGC-AGUCGC-UAGC-----------GCGUCAGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.