miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 393 0.74 0.442617
Target:  5'- aGCGcCGGCGcggucguguaccuguUCGCGUAGUCUGUGCg -3'
miRNA:   3'- gUGCaGUCGCu--------------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 1190 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 1665 0.69 0.711274
Target:  5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3'
miRNA:   3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 2497 0.66 0.854952
Target:  5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3'
miRNA:   3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 3306 0.69 0.72294
Target:  5'- uCGCG-CGG-GAUCGCGCg--CCGUGCa -3'
miRNA:   3'- -GUGCaGUCgCUAGCGCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 4995 0.68 0.770222
Target:  5'- cCGCGaagaCAGCGAagGgaGCGGUuuGCGCa -3'
miRNA:   3'- -GUGCa---GUCGCUagCg-CGUCAggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 6848 0.67 0.83933
Target:  5'- gGCGcCAGCGcgcaaccucuGUCGUGCGGgcuuguuucUCgGCGCg -3'
miRNA:   3'- gUGCaGUCGC----------UAGCGCGUC---------AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 6886 0.82 0.149723
Target:  5'- aGCGUCcGCGAgcCGCGCAGUCCcaGCGCg -3'
miRNA:   3'- gUGCAGuCGCUa-GCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 9442 0.66 0.876222
Target:  5'- aACGUCcugcaccauuAGCGGuuuccccUCGCGCAacgcUUCGCGCg -3'
miRNA:   3'- gUGCAG----------UCGCU-------AGCGCGUc---AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 9488 0.72 0.544509
Target:  5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 9838 0.66 0.854189
Target:  5'- gCACGUUcgcgagagggucaAGCGGccccuaUCggGCGCGGUCCcgGCGCg -3'
miRNA:   3'- -GUGCAG-------------UCGCU------AG--CGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 12131 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 12468 0.69 0.703444
Target:  5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3'
miRNA:   3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 13282 0.66 0.870524
Target:  5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 15045 0.7 0.663828
Target:  5'- cUACcUCAccucCG-UCGCGCAGUUCGCGCg -3'
miRNA:   3'- -GUGcAGUc---GCuAGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 15283 0.68 0.797246
Target:  5'- aCACGUCGGCGGccacuUCGCGCcgcgggaaAGauUCCGUaucGCu -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGCG--------UC--AGGCG---CG- -5'
24460 3' -57.5 NC_005264.1 + 15473 0.67 0.831245
Target:  5'- aCGCGaaagCGGCGAUCGCGgCGGgcaUGgGCc -3'
miRNA:   3'- -GUGCa---GUCGCUAGCGC-GUCag-GCgCG- -5'
24460 3' -57.5 NC_005264.1 + 17358 0.67 0.814563
Target:  5'- cCGCGgcagCuGGCGGcgGCGCGGUCUGUGUa -3'
miRNA:   3'- -GUGCa---G-UCGCUagCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 17518 0.7 0.693606
Target:  5'- cCGCGUCAGaCGGUCGUGCucUUCGUuaGCa -3'
miRNA:   3'- -GUGCAGUC-GCUAGCGCGucAGGCG--CG- -5'
24460 3' -57.5 NC_005264.1 + 24330 0.66 0.869803
Target:  5'- aGCGUUucuucgcgAGUGAaaUCGCGCGGcaaCCGcCGCa -3'
miRNA:   3'- gUGCAG--------UCGCU--AGCGCGUCa--GGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.