miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 24498 0.66 0.883837
Target:  5'- uCGCGUUcgGGCGccuuGUCGCGCA---CGCGCc -3'
miRNA:   3'- -GUGCAG--UCGC----UAGCGCGUcagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 25626 0.7 0.693606
Target:  5'- aCACGgCGGCGGUggggcCGCGC--UCCGCGUu -3'
miRNA:   3'- -GUGCaGUCGCUA-----GCGCGucAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 25660 0.69 0.72294
Target:  5'- gUACGUgAGCagcggaacGAUCGCGUAcUCUGCGUg -3'
miRNA:   3'- -GUGCAgUCG--------CUAGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 26293 0.66 0.883837
Target:  5'- uCGCGaUCGGCuccCGCGUcuucGUCCGCGUc -3'
miRNA:   3'- -GUGC-AGUCGcuaGCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 27895 0.66 0.854952
Target:  5'- cCGCGUUGGCuuUCGUGCAGaucggCCGaGCu -3'
miRNA:   3'- -GUGCAGUCGcuAGCGCGUCa----GGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 27948 0.71 0.593845
Target:  5'- gCGCGUCGGUGGUCGUGUcgcuuuGGgaaaCGCGUg -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCG------UCag--GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 30209 0.7 0.683718
Target:  5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3'
miRNA:   3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5'
24460 3' -57.5 NC_005264.1 + 30387 0.72 0.564113
Target:  5'- uCGCGUCucGGCGG-CG-GCGGUCgCGCGCc -3'
miRNA:   3'- -GUGCAG--UCGCUaGCgCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 30515 0.69 0.713225
Target:  5'- uGCGggaAGCGGcucUCGCGCAGUuuggccgaCCGCGg -3'
miRNA:   3'- gUGCag-UCGCU---AGCGCGUCA--------GGCGCg -5'
24460 3' -57.5 NC_005264.1 + 30613 0.7 0.653843
Target:  5'- gGCGaCGGCGGcgGCGaCGGaUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGCUagCGC-GUC-AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 31030 0.7 0.673789
Target:  5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3'
miRNA:   3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 32909 0.75 0.412213
Target:  5'- uGCGUUcuCGAUCGCGCAGgggucgcggggcgCCGCGUg -3'
miRNA:   3'- gUGCAGucGCUAGCGCGUCa------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 33250 0.72 0.544509
Target:  5'- aACGaggaagcagCGGCGAaCGCGCGaUCCGCGCc -3'
miRNA:   3'- gUGCa--------GUCGCUaGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 37547 0.67 0.83933
Target:  5'- aGCGUCAgGCGAagcgacagCGCGCcG-CCGCGg -3'
miRNA:   3'- gUGCAGU-CGCUa-------GCGCGuCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 42528 0.68 0.770222
Target:  5'- gAUGUgUGGCGuggGCGCAGcuUCCGCGCg -3'
miRNA:   3'- gUGCA-GUCGCuagCGCGUC--AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 43637 0.67 0.814563
Target:  5'- gCGCGcCGGCGAggUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU--AGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 44122 0.67 0.814563
Target:  5'- gGCGggauagCGGCGAUUacgagcgggaGgGCAGguaagCCGCGCg -3'
miRNA:   3'- gUGCa-----GUCGCUAG----------CgCGUCa----GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 45033 0.67 0.83933
Target:  5'- gGCGgcaggauggaCGGCGAcgaggaugcCGCGCAGUCCGaGCa -3'
miRNA:   3'- gUGCa---------GUCGCUa--------GCGCGUCAGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 46868 0.66 0.890536
Target:  5'- gGCGuUCAGCGucccuGUCGgGCg--CCGCGUa -3'
miRNA:   3'- gUGC-AGUCGC-----UAGCgCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 47598 0.66 0.876925
Target:  5'- aCGCGUUGGgGGagacUCGCGCGaaCgGCGCg -3'
miRNA:   3'- -GUGCAGUCgCU----AGCGCGUcaGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.