miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 47859 0.67 0.831245
Target:  5'- aGCGcCGGCa--CGCGCcucaAGUUCGCGCu -3'
miRNA:   3'- gUGCaGUCGcuaGCGCG----UCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 48357 0.71 0.613811
Target:  5'- cCAUGgCGGCcucGUUGCGCAGUgCCGCGUc -3'
miRNA:   3'- -GUGCaGUCGc--UAGCGCGUCA-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 50813 0.7 0.64384
Target:  5'- ---aUCGGCGcgCGCGCAgGUuuGCGUg -3'
miRNA:   3'- gugcAGUCGCuaGCGCGU-CAggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 51780 0.73 0.496576
Target:  5'- uCGCG-CGGCGGcacuUCGUccgGCgAGUCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU----AGCG---CG-UCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54346 0.69 0.732581
Target:  5'- gGCGUUuauGGCGAgccuuagaagcgUCGCGCGGccaccggauccCCGCGCg -3'
miRNA:   3'- gUGCAG---UCGCU------------AGCGCGUCa----------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54910 0.7 0.683718
Target:  5'- gCGCGUCGGCGGUaCGUGagaugaaGGUUauacaGCGCa -3'
miRNA:   3'- -GUGCAGUCGCUA-GCGCg------UCAGg----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 55180 0.67 0.83933
Target:  5'- gCGCGgcugaaggCGGCGAcCGCGaaacGUCgGCGCa -3'
miRNA:   3'- -GUGCa-------GUCGCUaGCGCgu--CAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59014 0.68 0.760967
Target:  5'- gGCGcUCAGCGaAUCGagcgcaagcccCGCGGUCC-CGCc -3'
miRNA:   3'- gUGC-AGUCGC-UAGC-----------GCGUCAGGcGCG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 59944 0.68 0.779359
Target:  5'- aGC-UCGGCGGUUaucaUGguGUCCGCGCc -3'
miRNA:   3'- gUGcAGUCGCUAGc---GCguCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60852 0.7 0.682727
Target:  5'- gGCGUCGGCGcgUGCGCggcaaaguuuucuAGUCUcucgGCGUa -3'
miRNA:   3'- gUGCAGUCGCuaGCGCG-------------UCAGG----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 61234 0.75 0.398751
Target:  5'- cCACGUUGGCGAUgGCGCGcUCCagcucacgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCUAgCGCGUcAGG--------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 62639 0.68 0.770222
Target:  5'- cCGCGgagcUCAGCGAagUCGCGCucguAGUUCGC-Ca -3'
miRNA:   3'- -GUGC----AGUCGCU--AGCGCG----UCAGGCGcG- -5'
24460 3' -57.5 NC_005264.1 + 62724 0.67 0.83933
Target:  5'- gGCGUCGG-GGUa--GUAGUCCGCGa -3'
miRNA:   3'- gUGCAGUCgCUAgcgCGUCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 64970 0.67 0.843305
Target:  5'- aACGUCAGCGugaccacuauucCGCugcggcgcucuacGUAGUCCGCGa -3'
miRNA:   3'- gUGCAGUCGCua----------GCG-------------CGUCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 66323 0.69 0.751603
Target:  5'- uGCG-CGGCG-UCGUGCAuGUuuGCGUu -3'
miRNA:   3'- gUGCaGUCGCuAGCGCGU-CAggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 66496 0.66 0.890536
Target:  5'- -cCGUgcCGGCGAUgGCGCGGUacagcgaGCGUg -3'
miRNA:   3'- guGCA--GUCGCUAgCGCGUCAgg-----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 67019 0.67 0.814563
Target:  5'- gACGgagCGGCGGccUUGCGCAGgcccCCGaCGUa -3'
miRNA:   3'- gUGCa--GUCGCU--AGCGCGUCa---GGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.