miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 68422 1.1 0.002081
Target:  5'- cCACGUCAGCGAUCGCGCAGUCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68488 0.66 0.883837
Target:  5'- gGCGgcugUAGCGGUCGaGCA--CUGCGCg -3'
miRNA:   3'- gUGCa---GUCGCUAGCgCGUcaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68749 0.68 0.797246
Target:  5'- uUACGUUGG-GGUCGC-CAGUCaCGCGg -3'
miRNA:   3'- -GUGCAGUCgCUAGCGcGUCAG-GCGCg -5'
24460 3' -57.5 NC_005264.1 + 71851 0.67 0.831245
Target:  5'- aCGCGUC-GCGGcgGCGguGuUCCGCGa -3'
miRNA:   3'- -GUGCAGuCGCUagCGCguC-AGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 74335 0.7 0.653843
Target:  5'- -uCGUCGGUGAUCucagagGCGaugaAGUCCGCGa -3'
miRNA:   3'- guGCAGUCGCUAG------CGCg---UCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 74616 0.67 0.831245
Target:  5'- uGCGUagaAGCGAUCuugGCGCGcuaccGUCaGCGCg -3'
miRNA:   3'- gUGCAg--UCGCUAG---CGCGU-----CAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 75105 0.67 0.837727
Target:  5'- gGCGcCGGCGccgagcuGggGCGCAGUcaaauggCCGCGCg -3'
miRNA:   3'- gUGCaGUCGC-------UagCGCGUCA-------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 75388 0.66 0.862477
Target:  5'- --aGUC-GUGGUgCGCGCcaccGUCUGCGCg -3'
miRNA:   3'- gugCAGuCGCUA-GCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 76348 0.72 0.544509
Target:  5'- cCGCG-CGGCGAcugCGCGCAGg-CGCGUu -3'
miRNA:   3'- -GUGCaGUCGCUa--GCGCGUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77302 0.66 0.876222
Target:  5'- aACGUCAGCuucaGGUCGCGggcgAGUugguucauugcccUCGCGCg -3'
miRNA:   3'- gUGCAGUCG----CUAGCGCg---UCA-------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77323 0.68 0.80598
Target:  5'- aACGcUCAGUGGauggaccggCGUGCAGaCCGCGUc -3'
miRNA:   3'- gUGC-AGUCGCUa--------GCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77401 0.69 0.713225
Target:  5'- gACGcCGGCaa--GCGCucccuGUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGcuagCGCGu----CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 78682 0.67 0.822987
Target:  5'- gGCGUCuccguAGUGAUCGCGaUGGU-CGUGCu -3'
miRNA:   3'- gUGCAG-----UCGCUAGCGC-GUCAgGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 84521 0.68 0.779359
Target:  5'- gGCGaCAGCGAaauguauuUCGCGCuGUuccCCGaCGCa -3'
miRNA:   3'- gUGCaGUCGCU--------AGCGCGuCA---GGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 86129 0.7 0.683718
Target:  5'- gAUGUCgaAGCGAguugCGcCGCGcUCCGCGCc -3'
miRNA:   3'- gUGCAG--UCGCUa---GC-GCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 86469 0.76 0.35932
Target:  5'- aCACGUgguUAGCGGguaccaacgcgccugCGCGCAGUcgCCGCGCg -3'
miRNA:   3'- -GUGCA---GUCGCUa--------------GCGCGUCA--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 87336 0.69 0.72294
Target:  5'- gCACGcUCGGCGAgCGUGCcccgguAGUCucaaCGCGCg -3'
miRNA:   3'- -GUGC-AGUCGCUaGCGCG------UCAG----GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 87593 0.67 0.814563
Target:  5'- aCACGgCGcGUGGUCGCGUuauacaagacGGccgCCGCGCa -3'
miRNA:   3'- -GUGCaGU-CGCUAGCGCG----------UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 88995 0.72 0.564113
Target:  5'- -uUGUUGGCuaugcugaGAUCGCGCAGcUCGCGCa -3'
miRNA:   3'- guGCAGUCG--------CUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 89088 0.67 0.83933
Target:  5'- uGCGcCAGCGAuaaggccuuauUCGCGUcuuacgAGaacCCGCGCa -3'
miRNA:   3'- gUGCaGUCGCU-----------AGCGCG------UCa--GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.