miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 162664 0.66 0.854952
Target:  5'- gCGCGcCGGCgGGUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCG-CUAGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 158053 0.66 0.883837
Target:  5'- --aGUCGGUGGaggUGCGCGaacGgcgCCGCGCa -3'
miRNA:   3'- gugCAGUCGCUa--GCGCGU---Ca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 157686 0.69 0.72294
Target:  5'- gGCuUCGGaCGAUgCgGCGCGG-CCGCGCa -3'
miRNA:   3'- gUGcAGUC-GCUA-G-CGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 156684 0.69 0.713225
Target:  5'- aCACGUgCAcGCGAUgCGCGaCGGg-CGCGCg -3'
miRNA:   3'- -GUGCA-GU-CGCUA-GCGC-GUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 155840 0.67 0.831245
Target:  5'- uCACGUUGGCGccgCcCGCAGggacaaccCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCua-GcGCGUCa-------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 154505 0.66 0.869803
Target:  5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3'
miRNA:   3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 152277 0.72 0.544509
Target:  5'- aACGaggaagcagCGGCGAaCGCGCGaUCCGCGCc -3'
miRNA:   3'- gUGCa--------GUCGCUaGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 152077 0.67 0.812004
Target:  5'- -cUGUCGGCGGUCuGCGCuaccaccugaucGaucaugccgucgguGUCCGCGCc -3'
miRNA:   3'- guGCAGUCGCUAG-CGCG------------U--------------CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 150057 0.7 0.673789
Target:  5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3'
miRNA:   3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149640 0.7 0.653843
Target:  5'- gGCGaCGGCGGcgGCGaCGGaUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGCUagCGC-GUC-AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149414 0.72 0.564113
Target:  5'- uCGCGUCucGGCGG-CG-GCGGUCgCGCGCc -3'
miRNA:   3'- -GUGCAG--UCGCUaGCgCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149236 0.7 0.683718
Target:  5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3'
miRNA:   3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5'
24460 3' -57.5 NC_005264.1 + 146882 0.76 0.366355
Target:  5'- aGCGcCAGUGGUUGCGUGGcUCGCGCa -3'
miRNA:   3'- gUGCaGUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 139123 0.69 0.732581
Target:  5'- aCACGgCAGCaGAuuguUCGUGUGGcCCGCGUg -3'
miRNA:   3'- -GUGCaGUCG-CU----AGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 137387 0.68 0.770222
Target:  5'- cCACGUCGGCGA-CaaGCAGUUCGaggagGCc -3'
miRNA:   3'- -GUGCAGUCGCUaGcgCGUCAGGCg----CG- -5'
24460 3' -57.5 NC_005264.1 + 137292 0.66 0.883837
Target:  5'- gACGagcGCGAcaaGCGCcuuGUCCGCGCc -3'
miRNA:   3'- gUGCaguCGCUag-CGCGu--CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 136553 0.66 0.890536
Target:  5'- aCGCGggAGcCGAUCGCGaucCAGgaaCGCGCc -3'
miRNA:   3'- -GUGCagUC-GCUAGCGC---GUCag-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 136416 0.66 0.854952
Target:  5'- -cCGUCcGCGGUCuCGUAGUCUGagGCg -3'
miRNA:   3'- guGCAGuCGCUAGcGCGUCAGGCg-CG- -5'
24460 3' -57.5 NC_005264.1 + 135154 0.7 0.659836
Target:  5'- aGCGUCGGCGAggcagaggccagcCGCGUaccucGGUCCgaGCGCc -3'
miRNA:   3'- gUGCAGUCGCUa------------GCGCG-----UCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 133963 0.67 0.831245
Target:  5'- gGgGUCuucGCGGUgGCGUucgCCGCGCg -3'
miRNA:   3'- gUgCAGu--CGCUAgCGCGucaGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.