miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 132309 0.66 0.870524
Target:  5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 131686 0.66 0.883837
Target:  5'- gCACGUCGGCucgcaaGCGUAGcgugggcCUGCGCg -3'
miRNA:   3'- -GUGCAGUCGcuag--CGCGUCa------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 131495 0.69 0.703444
Target:  5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3'
miRNA:   3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 131158 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128864 0.66 0.854189
Target:  5'- gCACGUUcgcgagagggucaAGCGGccccuaUCggGCGCGGUCCcgGCGCg -3'
miRNA:   3'- -GUGCAG-------------UCGCU------AG--CGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 128515 0.72 0.544509
Target:  5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128473 0.73 0.496576
Target:  5'- gGCGUCGGCaaguUCGCGCuuggCCGCGUc -3'
miRNA:   3'- gUGCAGUCGcu--AGCGCGuca-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 127339 0.67 0.814563
Target:  5'- uCACGUcCAGCGAuaccaagccgUCGCGauCGG-CCGCGg -3'
miRNA:   3'- -GUGCA-GUCGCU----------AGCGC--GUCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 126444 0.67 0.814563
Target:  5'- uCACGUCAGCuaGAUgGCGCcua--GCGCg -3'
miRNA:   3'- -GUGCAGUCG--CUAgCGCGucaggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125874 0.67 0.83933
Target:  5'- gGCGcCAGCGcgcaaccucuGUCGUGCGGgcuuguuucUCgGCGCg -3'
miRNA:   3'- gUGCaGUCGC----------UAGCGCGUC---------AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125439 0.66 0.876222
Target:  5'- aGCGaCgAGCGAUUGuUGCGGUCCcucugccGCGCc -3'
miRNA:   3'- gUGCaG-UCGCUAGC-GCGUCAGG-------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 125038 0.68 0.78837
Target:  5'- -uCGUCGGCGG-CGCGCcucuucUCCGcCGCu -3'
miRNA:   3'- guGCAGUCGCUaGCGCGuc----AGGC-GCG- -5'
24460 3' -57.5 NC_005264.1 + 123988 0.69 0.747828
Target:  5'- aCGCGUCaccgacucggcacGGUGccCGCGCAucgucgucguucucGUCCGCGCc -3'
miRNA:   3'- -GUGCAG-------------UCGCuaGCGCGU--------------CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 123167 0.66 0.893155
Target:  5'- aCugGUCAGCaauGAUCuCGCagAGUuguacuuggacgaggCCGCGCg -3'
miRNA:   3'- -GugCAGUCG---CUAGcGCG--UCA---------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 121524 0.66 0.854952
Target:  5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3'
miRNA:   3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 120692 0.69 0.711274
Target:  5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3'
miRNA:   3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 120217 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 118062 0.7 0.673789
Target:  5'- gGCGUCGGCaacGAUCGcCGCGGgcaCCuuuggGCGCa -3'
miRNA:   3'- gUGCAGUCG---CUAGC-GCGUCa--GG-----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 115179 0.67 0.83933
Target:  5'- aCGCGUCuGCGAUucucacucCGCGaCA-UCCGCGa -3'
miRNA:   3'- -GUGCAGuCGCUA--------GCGC-GUcAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 114725 0.68 0.786578
Target:  5'- gGCGUUugagcaugagccGCGcgCGUGCAGaacCCGCGCg -3'
miRNA:   3'- gUGCAGu-----------CGCuaGCGCGUCa--GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.