miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 114689 0.74 0.432924
Target:  5'- cCACGccgagCAG-GAUUGCGCGGUCuCGUGCg -3'
miRNA:   3'- -GUGCa----GUCgCUAGCGCGUCAG-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 114462 0.68 0.78837
Target:  5'- aACGUCgAGCGccUCGaCGCGGcaCUGCGCa -3'
miRNA:   3'- gUGCAG-UCGCu-AGC-GCGUCa-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 110896 0.66 0.862477
Target:  5'- aCGCGUUAGCGGcacccUCGCcaAGcUCgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGcgUC-AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 110245 0.71 0.623817
Target:  5'- gCAUGUCAGCcaauccacguaGcgCGCGUAGgcagCCGUGCc -3'
miRNA:   3'- -GUGCAGUCG-----------CuaGCGCGUCa---GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 109986 0.68 0.797246
Target:  5'- gCACGUC-GUaugCGCGCAGcucCCGCGUa -3'
miRNA:   3'- -GUGCAGuCGcuaGCGCGUCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 108805 0.68 0.800757
Target:  5'- gCACGUCGGCaaGAuauguggucuucaagUCGCGCAaGUaggcauccaCGCGCg -3'
miRNA:   3'- -GUGCAGUCG--CU---------------AGCGCGU-CAg--------GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108466 0.69 0.732581
Target:  5'- cCGCG-CGGgGAUC-CGguGgCCGCGCg -3'
miRNA:   3'- -GUGCaGUCgCUAGcGCguCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 107654 0.69 0.742138
Target:  5'- gACGUUucGCGGUCGCcgccuuCAG-CCGCGCc -3'
miRNA:   3'- gUGCAGu-CGCUAGCGc-----GUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 106772 0.69 0.72294
Target:  5'- gGCGUCAGCGggCGUGCAGaaCUGUu- -3'
miRNA:   3'- gUGCAGUCGCuaGCGCGUCa-GGCGcg -5'
24460 3' -57.5 NC_005264.1 + 106523 0.69 0.703444
Target:  5'- gCGCGaCGGCGGcaGCGCGG-CCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 106228 0.69 0.751603
Target:  5'- gGCGUCuauuacucgAGCGGUCGCG-AGgcgCuCGCGCc -3'
miRNA:   3'- gUGCAG---------UCGCUAGCGCgUCa--G-GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 100241 0.73 0.495636
Target:  5'- aACGUCcGCGccgcuacuUCGCGCGGucaauuuuaucgaUCCGCGCa -3'
miRNA:   3'- gUGCAGuCGCu-------AGCGCGUC-------------AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 99909 0.71 0.623817
Target:  5'- gCGCGgcuuGCGGcCGCGCaAGcCCGCGCg -3'
miRNA:   3'- -GUGCagu-CGCUaGCGCG-UCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 98655 0.68 0.80598
Target:  5'- gACGUCAGaCGAa--CGguGUCgGCGCu -3'
miRNA:   3'- gUGCAGUC-GCUagcGCguCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 97369 0.66 0.883837
Target:  5'- uGCGUgCAuGCGAgcUCGCaggcccGCAGgCCGUGCa -3'
miRNA:   3'- gUGCA-GU-CGCU--AGCG------CGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 96342 0.67 0.814563
Target:  5'- -uCGUCgAGCGcgcCGCGCAGcCCGCcaaGCa -3'
miRNA:   3'- guGCAG-UCGCua-GCGCGUCaGGCG---CG- -5'
24460 3' -57.5 NC_005264.1 + 95461 0.66 0.862477
Target:  5'- cCGCGcCGGCGG--GCGCAGcgaGCGCg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 93239 0.66 0.854952
Target:  5'- uCACGccgggCGGCGcccucGUCgGCGC-GUUCGCGCa -3'
miRNA:   3'- -GUGCa----GUCGC-----UAG-CGCGuCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 90810 0.67 0.831245
Target:  5'- gAgGUCAGCcgucUCGCGUguGGcggCCGCGCa -3'
miRNA:   3'- gUgCAGUCGcu--AGCGCG--UCa--GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.