miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 131158 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149640 0.7 0.653843
Target:  5'- gGCGaCGGCGGcgGCGaCGGaUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGCUagCGC-GUC-AGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 135154 0.7 0.659836
Target:  5'- aGCGUCGGCGAggcagaggccagcCGCGUaccucGGUCCgaGCGCc -3'
miRNA:   3'- gUGCAGUCGCUa------------GCGCG-----UCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 15045 0.7 0.663828
Target:  5'- cUACcUCAccucCG-UCGCGCAGUUCGCGCg -3'
miRNA:   3'- -GUGcAGUc---GCuAGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 118062 0.7 0.673789
Target:  5'- gGCGUCGGCaacGAUCGcCGCGGgcaCCuuuggGCGCa -3'
miRNA:   3'- gUGCAGUCG---CUAGC-GCGUCa--GG-----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 150057 0.7 0.673789
Target:  5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3'
miRNA:   3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60852 0.7 0.682727
Target:  5'- gGCGUCGGCGcgUGCGCggcaaaguuuucuAGUCUcucgGCGUa -3'
miRNA:   3'- gUGCAGUCGCuaGCGCG-------------UCAGG----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 54910 0.7 0.683718
Target:  5'- gCGCGUCGGCGGUaCGUGagaugaaGGUUauacaGCGCa -3'
miRNA:   3'- -GUGCAGUCGCUA-GCGCg------UCAGg----CGCG- -5'
24460 3' -57.5 NC_005264.1 + 149236 0.7 0.683718
Target:  5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3'
miRNA:   3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5'
24460 3' -57.5 NC_005264.1 + 110245 0.71 0.623817
Target:  5'- gCAUGUCAGCcaauccacguaGcgCGCGUAGgcagCCGUGCc -3'
miRNA:   3'- -GUGCAGUCG-----------CuaGCGCGUCa---GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 48357 0.71 0.613811
Target:  5'- cCAUGgCGGCcucGUUGCGCAGUgCCGCGUc -3'
miRNA:   3'- -GUGCaGUCGc--UAGCGCGUCA-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 27948 0.71 0.593845
Target:  5'- gCGCGUCGGUGGUCGUGUcgcuuuGGgaaaCGCGUg -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCG------UCag--GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 146882 0.76 0.366355
Target:  5'- aGCGcCAGUGGUUGCGUGGcUCGCGCa -3'
miRNA:   3'- gUGCaGUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 61234 0.75 0.398751
Target:  5'- cCACGUUGGCGAUgGCGCGcUCCagcucacgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCUAgCGCGUcAGG--------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 32909 0.75 0.412213
Target:  5'- uGCGUUcuCGAUCGCGCAGgggucgcggggcgCCGCGUg -3'
miRNA:   3'- gUGCAGucGCUAGCGCGUCa------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 393 0.74 0.442617
Target:  5'- aGCGcCGGCGcggucguguaccuguUCGCGUAGUCUGUGCg -3'
miRNA:   3'- gUGCaGUCGCu--------------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 128515 0.72 0.544509
Target:  5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 76348 0.72 0.544509
Target:  5'- cCGCG-CGGCGAcugCGCGCAGg-CGCGUu -3'
miRNA:   3'- -GUGCaGUCGCUa--GCGCGUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 152277 0.72 0.544509
Target:  5'- aACGaggaagcagCGGCGAaCGCGCGaUCCGCGCc -3'
miRNA:   3'- gUGCa--------GUCGCUaGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149414 0.72 0.564113
Target:  5'- uCGCGUCucGGCGG-CG-GCGGUCgCGCGCc -3'
miRNA:   3'- -GUGCAG--UCGCUaGCgCGUCAG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.