Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24460 | 3' | -57.5 | NC_005264.1 | + | 128515 | 0.72 | 0.544509 |
Target: 5'- uCGCGUCAGCGAgucagccaGCGuCAGgcgCgGCGCc -3' miRNA: 3'- -GUGCAGUCGCUag------CGC-GUCa--GgCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 393 | 0.74 | 0.442617 |
Target: 5'- aGCGcCGGCGcggucguguaccuguUCGCGUAGUCUGUGCg -3' miRNA: 3'- gUGCaGUCGCu--------------AGCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 32909 | 0.75 | 0.412213 |
Target: 5'- uGCGUUcuCGAUCGCGCAGgggucgcggggcgCCGCGUg -3' miRNA: 3'- gUGCAGucGCUAGCGCGUCa------------GGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 61234 | 0.75 | 0.398751 |
Target: 5'- cCACGUUGGCGAUgGCGCGcUCCagcucacgGCGCg -3' miRNA: 3'- -GUGCAGUCGCUAgCGCGUcAGG--------CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 146882 | 0.76 | 0.366355 |
Target: 5'- aGCGcCAGUGGUUGCGUGGcUCGCGCa -3' miRNA: 3'- gUGCaGUCGCUAGCGCGUCaGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 15045 | 0.7 | 0.663828 |
Target: 5'- cUACcUCAccucCG-UCGCGCAGUUCGCGCg -3' miRNA: 3'- -GUGcAGUc---GCuAGCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 118062 | 0.7 | 0.673789 |
Target: 5'- gGCGUCGGCaacGAUCGcCGCGGgcaCCuuuggGCGCa -3' miRNA: 3'- gUGCAGUCG---CUAGC-GCGUCa--GG-----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 25660 | 0.69 | 0.72294 |
Target: 5'- gUACGUgAGCagcggaacGAUCGCGUAcUCUGCGUg -3' miRNA: 3'- -GUGCAgUCG--------CUAGCGCGUcAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 87336 | 0.69 | 0.72294 |
Target: 5'- gCACGcUCGGCGAgCGUGCcccgguAGUCucaaCGCGCg -3' miRNA: 3'- -GUGC-AGUCGCUaGCGCG------UCAG----GCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 156684 | 0.69 | 0.713225 |
Target: 5'- aCACGUgCAcGCGAUgCGCGaCGGg-CGCGCg -3' miRNA: 3'- -GUGCA-GU-CGCUA-GCGC-GUCagGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 77401 | 0.69 | 0.713225 |
Target: 5'- gACGcCGGCaa--GCGCucccuGUCCGCGCg -3' miRNA: 3'- gUGCaGUCGcuagCGCGu----CAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 30515 | 0.69 | 0.713225 |
Target: 5'- uGCGggaAGCGGcucUCGCGCAGUuuggccgaCCGCGg -3' miRNA: 3'- gUGCag-UCGCU---AGCGCGUCA--------GGCGCg -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 120692 | 0.69 | 0.711274 |
Target: 5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3' miRNA: 3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 131495 | 0.69 | 0.703444 |
Target: 5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3' miRNA: 3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 17518 | 0.7 | 0.693606 |
Target: 5'- cCGCGUCAGaCGGUCGUGCucUUCGUuaGCa -3' miRNA: 3'- -GUGCAGUC-GCUAGCGCGucAGGCG--CG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 131158 | 0.7 | 0.693606 |
Target: 5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3' miRNA: 3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 149236 | 0.7 | 0.683718 |
Target: 5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3' miRNA: 3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 54910 | 0.7 | 0.683718 |
Target: 5'- gCGCGUCGGCGGUaCGUGagaugaaGGUUauacaGCGCa -3' miRNA: 3'- -GUGCAGUCGCUA-GCGCg------UCAGg----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 60852 | 0.7 | 0.682727 |
Target: 5'- gGCGUCGGCGcgUGCGCggcaaaguuuucuAGUCUcucgGCGUa -3' miRNA: 3'- gUGCAGUCGCuaGCGCG-------------UCAGG----CGCG- -5' |
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24460 | 3' | -57.5 | NC_005264.1 | + | 150057 | 0.7 | 0.673789 |
Target: 5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3' miRNA: 3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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