miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 3306 0.69 0.72294
Target:  5'- uCGCG-CGG-GAUCGCGCg--CCGUGCa -3'
miRNA:   3'- -GUGCaGUCgCUAGCGCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 25660 0.69 0.72294
Target:  5'- gUACGUgAGCagcggaacGAUCGCGUAcUCUGCGUg -3'
miRNA:   3'- -GUGCAgUCG--------CUAGCGCGUcAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 87336 0.69 0.72294
Target:  5'- gCACGcUCGGCGAgCGUGCcccgguAGUCucaaCGCGCg -3'
miRNA:   3'- -GUGC-AGUCGCUaGCGCG------UCAG----GCGCG- -5'
24460 3' -57.5 NC_005264.1 + 156684 0.69 0.713225
Target:  5'- aCACGUgCAcGCGAUgCGCGaCGGg-CGCGCg -3'
miRNA:   3'- -GUGCA-GU-CGCUA-GCGC-GUCagGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 149236 0.7 0.683718
Target:  5'- cCGCGUCccgaccGCGAUCGC-CGGUCC-CGUc -3'
miRNA:   3'- -GUGCAGu-----CGCUAGCGcGUCAGGcGCG- -5'
24460 3' -57.5 NC_005264.1 + 131158 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 17518 0.7 0.693606
Target:  5'- cCGCGUCAGaCGGUCGUGCucUUCGUuaGCa -3'
miRNA:   3'- -GUGCAGUC-GCUAGCGCGucAGGCG--CG- -5'
24460 3' -57.5 NC_005264.1 + 131495 0.69 0.703444
Target:  5'- gGCGUCAGCGAguucUUGCGUGG-CCG-GUg -3'
miRNA:   3'- gUGCAGUCGCU----AGCGCGUCaGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 120692 0.69 0.711274
Target:  5'- uUACGcCAGCGccuuuuguucucUCGUGCGGUCUcaGCGCa -3'
miRNA:   3'- -GUGCaGUCGCu-----------AGCGCGUCAGG--CGCG- -5'
24460 3' -57.5 NC_005264.1 + 30515 0.69 0.713225
Target:  5'- uGCGggaAGCGGcucUCGCGCAGUuuggccgaCCGCGg -3'
miRNA:   3'- gUGCag-UCGCU---AGCGCGUCA--------GGCGCg -5'
24460 3' -57.5 NC_005264.1 + 77401 0.69 0.713225
Target:  5'- gACGcCGGCaa--GCGCucccuGUCCGCGCg -3'
miRNA:   3'- gUGCaGUCGcuagCGCGu----CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 26293 0.66 0.883837
Target:  5'- uCGCGaUCGGCuccCGCGUcuucGUCCGCGUc -3'
miRNA:   3'- -GUGC-AGUCGcuaGCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68488 0.66 0.883837
Target:  5'- gGCGgcugUAGCGGUCGaGCA--CUGCGCg -3'
miRNA:   3'- gUGCa---GUCGCUAGCgCGUcaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 97369 0.66 0.883837
Target:  5'- uGCGUgCAuGCGAgcUCGCaggcccGCAGgCCGUGCa -3'
miRNA:   3'- gUGCA-GU-CGCU--AGCG------CGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 46868 0.66 0.890536
Target:  5'- gGCGuUCAGCGucccuGUCGgGCg--CCGCGUa -3'
miRNA:   3'- gUGC-AGUCGC-----UAGCgCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 68422 1.1 0.002081
Target:  5'- cCACGUCAGCGAUCGCGCAGUCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCGUCAGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.