miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 123167 0.66 0.893155
Target:  5'- aCugGUCAGCaauGAUCuCGCagAGUuguacuuggacgaggCCGCGCg -3'
miRNA:   3'- -GugCAGUCG---CUAGcGCG--UCA---------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 154505 0.66 0.869803
Target:  5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3'
miRNA:   3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 110896 0.66 0.862477
Target:  5'- aCGCGUUAGCGGcacccUCGCcaAGcUCgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGcgUC-AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68422 1.1 0.002081
Target:  5'- cCACGUCAGCGAUCGCGCAGUCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCUAGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 97369 0.66 0.883837
Target:  5'- uGCGUgCAuGCGAgcUCGCaggcccGCAGgCCGUGCa -3'
miRNA:   3'- gUGCA-GU-CGCU--AGCG------CGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 26293 0.66 0.883837
Target:  5'- uCGCGaUCGGCuccCGCGUcuucGUCCGCGUc -3'
miRNA:   3'- -GUGC-AGUCGcuaGCGCGu---CAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 1190 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 13282 0.66 0.870524
Target:  5'- uCGCGcCAGCGAggcgggUCGUGgAGcuccccggaggacggCCGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU------AGCGCgUCa--------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 47598 0.66 0.876925
Target:  5'- aCGCGUUGGgGGagacUCGCGCGaaCgGCGCg -3'
miRNA:   3'- -GUGCAGUCgCU----AGCGCGUcaGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 131686 0.66 0.883837
Target:  5'- gCACGUCGGCucgcaaGCGUAGcgugggcCUGCGCg -3'
miRNA:   3'- -GUGCAGUCGcuag--CGCGUCa------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 77302 0.66 0.876222
Target:  5'- aACGUCAGCuucaGGUCGCGggcgAGUugguucauugcccUCGCGCg -3'
miRNA:   3'- gUGCAGUCG----CUAGCGCg---UCA-------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 158053 0.66 0.883837
Target:  5'- --aGUCGGUGGaggUGCGCGaacGgcgCCGCGCa -3'
miRNA:   3'- gugCAGUCGCUa--GCGCGU---Ca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 125439 0.66 0.876222
Target:  5'- aGCGaCgAGCGAUUGuUGCGGUCCcucugccGCGCc -3'
miRNA:   3'- gUGCaG-UCGCUAGC-GCGUCAGG-------CGCG- -5'
24460 3' -57.5 NC_005264.1 + 95461 0.66 0.862477
Target:  5'- cCGCGcCGGCGG--GCGCAGcgaGCGCg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 46868 0.66 0.890536
Target:  5'- gGCGuUCAGCGucccuGUCGgGCg--CCGCGUa -3'
miRNA:   3'- gUGC-AGUCGC-----UAGCgCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 68488 0.66 0.883837
Target:  5'- gGCGgcugUAGCGGUCGaGCA--CUGCGCg -3'
miRNA:   3'- gUGCa---GUCGCUAGCgCGUcaGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.