miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 27895 0.66 0.854952
Target:  5'- cCGCGUUGGCuuUCGUGCAGaucggCCGaGCu -3'
miRNA:   3'- -GUGCAGUCGcuAGCGCGUCa----GGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 110896 0.66 0.862477
Target:  5'- aCGCGUUAGCGGcacccUCGCcaAGcUCgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGcgUC-AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 131686 0.66 0.883837
Target:  5'- gCACGUCGGCucgcaaGCGUAGcgugggcCUGCGCg -3'
miRNA:   3'- -GUGCAGUCGcuag--CGCGUCa------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 46868 0.66 0.890536
Target:  5'- gGCGuUCAGCGucccuGUCGgGCg--CCGCGUa -3'
miRNA:   3'- gUGC-AGUCGC-----UAGCgCGucaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 127339 0.67 0.814563
Target:  5'- uCACGUcCAGCGAuaccaagccgUCGCGauCGG-CCGCGg -3'
miRNA:   3'- -GUGCA-GUCGCU----------AGCGC--GUCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 6848 0.67 0.83933
Target:  5'- gGCGcCAGCGcgcaaccucuGUCGUGCGGgcuuguuucUCgGCGCg -3'
miRNA:   3'- gUGCaGUCGC----------UAGCGCGUC---------AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 154505 0.66 0.869803
Target:  5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3'
miRNA:   3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 45033 0.67 0.83933
Target:  5'- gGCGgcaggauggaCGGCGAcgaggaugcCGCGCAGUCCGaGCa -3'
miRNA:   3'- gUGCa---------GUCGCUa--------GCGCGUCAGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 95461 0.66 0.862477
Target:  5'- cCGCGcCGGCGG--GCGCAGcgaGCGCg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaggCGCG- -5'
24460 3' -57.5 NC_005264.1 + 2497 0.66 0.854952
Target:  5'- --gGUCGGCGGgccUCGCGCGacuUCaGCGCg -3'
miRNA:   3'- gugCAGUCGCU---AGCGCGUc--AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77302 0.66 0.876222
Target:  5'- aACGUCAGCuucaGGUCGCGggcgAGUugguucauugcccUCGCGCg -3'
miRNA:   3'- gUGCAGUCG----CUAGCGCg---UCA-------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 1190 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 87593 0.67 0.814563
Target:  5'- aCACGgCGcGUGGUCGCGUuauacaagacGGccgCCGCGCa -3'
miRNA:   3'- -GUGCaGU-CGCUAGCGCG----------UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 43637 0.67 0.814563
Target:  5'- gCGCGcCGGCGAggUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU--AGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 90810 0.67 0.831245
Target:  5'- gAgGUCAGCcgucUCGCGUguGGcggCCGCGCa -3'
miRNA:   3'- gUgCAGUCGcu--AGCGCG--UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 62724 0.67 0.83933
Target:  5'- gGCGUCGG-GGUa--GUAGUCCGCGa -3'
miRNA:   3'- gUGCAGUCgCUAgcgCGUCAGGCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.