miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 3' -57.5 NC_005264.1 + 74616 0.67 0.831245
Target:  5'- uGCGUagaAGCGAUCuugGCGCGcuaccGUCaGCGCg -3'
miRNA:   3'- gUGCAg--UCGCUAG---CGCGU-----CAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 154505 0.66 0.869803
Target:  5'- aAgGUCuGCGGg-GCGCAcaugCCGCGCg -3'
miRNA:   3'- gUgCAGuCGCUagCGCGUca--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 60972 0.66 0.890536
Target:  5'- --gGUUGGUGGUCGCGguGUacCUGCuGCu -3'
miRNA:   3'- gugCAGUCGCUAGCGCguCA--GGCG-CG- -5'
24460 3' -57.5 NC_005264.1 + 155840 0.67 0.831245
Target:  5'- uCACGUUGGCGccgCcCGCAGggacaaccCCGCGCc -3'
miRNA:   3'- -GUGCAGUCGCua-GcGCGUCa-------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 59030 0.66 0.890536
Target:  5'- gCGCGUCAGguCGGUcucCGCGCA-UCCGaacCGCg -3'
miRNA:   3'- -GUGCAGUC--GCUA---GCGCGUcAGGC---GCG- -5'
24460 3' -57.5 NC_005264.1 + 31030 0.7 0.673789
Target:  5'- gACGgugccgccUAGCGGUCGUGCGG-CUGCGUu -3'
miRNA:   3'- gUGCa-------GUCGCUAGCGCGUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 108891 0.66 0.883837
Target:  5'- gACGcCAuGUGGUgCGCGCGGUCUaaCGCg -3'
miRNA:   3'- gUGCaGU-CGCUA-GCGCGUCAGGc-GCG- -5'
24460 3' -57.5 NC_005264.1 + 12131 0.7 0.693606
Target:  5'- gGCGggCAGCcccgccGAgagcccugccUCGCGCAGUUCGCGUc -3'
miRNA:   3'- gUGCa-GUCG------CU----------AGCGCGUCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 106523 0.69 0.703444
Target:  5'- gCGCGaCGGCGGcaGCGCGG-CCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUagCGCGUCaGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 107654 0.69 0.742138
Target:  5'- gACGUUucGCGGUCGCcgccuuCAG-CCGCGCc -3'
miRNA:   3'- gUGCAGu-CGCUAGCGc-----GUCaGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 114462 0.68 0.78837
Target:  5'- aACGUCgAGCGccUCGaCGCGGcaCUGCGCa -3'
miRNA:   3'- gUGCAG-UCGCu-AGC-GCGUCa-GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 87593 0.67 0.814563
Target:  5'- aCACGgCGcGUGGUCGCGUuauacaagacGGccgCCGCGCa -3'
miRNA:   3'- -GUGCaGU-CGCUAGCGCG----------UCa--GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 43637 0.67 0.814563
Target:  5'- gCGCGcCGGCGAggUCGUagguguaCGGUCgGCGCg -3'
miRNA:   3'- -GUGCaGUCGCU--AGCGc------GUCAGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 47859 0.67 0.831245
Target:  5'- aGCGcCGGCa--CGCGCcucaAGUUCGCGCu -3'
miRNA:   3'- gUGCaGUCGcuaGCGCG----UCAGGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 45033 0.67 0.83933
Target:  5'- gGCGgcaggauggaCGGCGAcgaggaugcCGCGCAGUCCGaGCa -3'
miRNA:   3'- gUGCa---------GUCGCUa--------GCGCGUCAGGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 27895 0.66 0.854952
Target:  5'- cCGCGUUGGCuuUCGUGCAGaucggCCGaGCu -3'
miRNA:   3'- -GUGCAGUCGcuAGCGCGUCa----GGCgCG- -5'
24460 3' -57.5 NC_005264.1 + 110896 0.66 0.862477
Target:  5'- aCGCGUUAGCGGcacccUCGCcaAGcUCgGCGCg -3'
miRNA:   3'- -GUGCAGUCGCU-----AGCGcgUC-AGgCGCG- -5'
24460 3' -57.5 NC_005264.1 + 77302 0.66 0.876222
Target:  5'- aACGUCAGCuucaGGUCGCGggcgAGUugguucauugcccUCGCGCg -3'
miRNA:   3'- gUGCAGUCG----CUAGCGCg---UCA-------------GGCGCG- -5'
24460 3' -57.5 NC_005264.1 + 1190 0.66 0.883837
Target:  5'- gUACG-CAGCGGacCGgGC-GUCCGCGg -3'
miRNA:   3'- -GUGCaGUCGCUa-GCgCGuCAGGCGCg -5'
24460 3' -57.5 NC_005264.1 + 54115 0.66 0.883837
Target:  5'- gAUGUCAGUGGagaguucgagCGCGCcggGGUCgGUGCc -3'
miRNA:   3'- gUGCAGUCGCUa---------GCGCG---UCAGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.