miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24460 5' -55.5 NC_005264.1 + 122638 0.66 0.923934
Target:  5'- cGC-CGCGGGGGGCCgcgagggcgggCgCGCUGAc--- -3'
miRNA:   3'- -CGcGCGCCUCCCGGa----------G-GUGAUUauaa -5'
24460 5' -55.5 NC_005264.1 + 3611 0.66 0.923934
Target:  5'- cGC-CGCGGGGGGCCgcgagggcgggCgCGCUGAc--- -3'
miRNA:   3'- -CGcGCGCCUCCCGGa----------G-GUGAUUauaa -5'
24460 5' -55.5 NC_005264.1 + 52118 0.66 0.923934
Target:  5'- aGCGaGCaGGA-GGCCUCCGgUGAUGg- -3'
miRNA:   3'- -CGCgCG-CCUcCCGGAGGUgAUUAUaa -5'
24460 5' -55.5 NC_005264.1 + 122438 0.66 0.923934
Target:  5'- gGUGCGCGGgggagggacguAGGGCCgcgcCCGCg------ -3'
miRNA:   3'- -CGCGCGCC-----------UCCCGGa---GGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 71070 0.66 0.923934
Target:  5'- cUGCGCGGGuGGGCCcCUugUAu---- -3'
miRNA:   3'- cGCGCGCCU-CCCGGaGGugAUuauaa -5'
24460 5' -55.5 NC_005264.1 + 3411 0.66 0.923934
Target:  5'- gGUGCGCGGgggagggacguAGGGCCgcgcCCGCg------ -3'
miRNA:   3'- -CGCGCGCC-----------UCCCGGa---GGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 135807 0.66 0.923382
Target:  5'- cGCGUuuccacaGUGGAGaGCCUCCugUGAa--- -3'
miRNA:   3'- -CGCG-------CGCCUCcCGGAGGugAUUauaa -5'
24460 5' -55.5 NC_005264.1 + 127868 0.66 0.899969
Target:  5'- gGCGCGCGaauGGGGUCUCCGu------- -3'
miRNA:   3'- -CGCGCGCc--UCCCGGAGGUgauuauaa -5'
24460 5' -55.5 NC_005264.1 + 52006 0.66 0.899969
Target:  5'- cGCGCGCGGAGcGaCC-CCGCUc----- -3'
miRNA:   3'- -CGCGCGCCUCcC-GGaGGUGAuuauaa -5'
24460 5' -55.5 NC_005264.1 + 160646 0.67 0.896044
Target:  5'- aGCGCGCaugggcgccggcaauGGAGGGgCaacgCCGCgggGAUAUUa -3'
miRNA:   3'- -CGCGCG---------------CCUCCCgGa---GGUGa--UUAUAA- -5'
24460 5' -55.5 NC_005264.1 + 40650 0.67 0.879506
Target:  5'- cGCGaCGCGGAGGGUCgCCGu------- -3'
miRNA:   3'- -CGC-GCGCCUCCCGGaGGUgauuauaa -5'
24460 5' -55.5 NC_005264.1 + 66201 0.67 0.864734
Target:  5'- gGCGgGCGGuGcGCCUCCGCg------ -3'
miRNA:   3'- -CGCgCGCCuCcCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 157263 0.67 0.864734
Target:  5'- gGCGCGuUGGAGguGGUCUCCGCa------ -3'
miRNA:   3'- -CGCGC-GCCUC--CCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 1424 0.67 0.857025
Target:  5'- -aGCGgGGAugaggaaaGGGCCUCCGCg------ -3'
miRNA:   3'- cgCGCgCCU--------CCCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 120451 0.67 0.857025
Target:  5'- -aGCGgGGAugaggaaaGGGCCUCCGCg------ -3'
miRNA:   3'- cgCGCgCCU--------CCCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 154342 0.68 0.831837
Target:  5'- uCGCGCGGAGccagcucuucuucGGCUUCCGCa------ -3'
miRNA:   3'- cGCGCGCCUC-------------CCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 35315 0.68 0.831837
Target:  5'- uCGCGCGGAGccagcucuucuucGGCUUCCGCa------ -3'
miRNA:   3'- cGCGCGCCUC-------------CCGGAGGUGauuauaa -5'
24460 5' -55.5 NC_005264.1 + 116319 0.69 0.788493
Target:  5'- uGCGCGcCGGAGcGGCCUgCuugAAUAUUu -3'
miRNA:   3'- -CGCGC-GCCUC-CCGGAgGugaUUAUAA- -5'
24460 5' -55.5 NC_005264.1 + 57275 0.69 0.788493
Target:  5'- aGCcCGCGG-GGGUCUCCAUUGu---- -3'
miRNA:   3'- -CGcGCGCCuCCCGGAGGUGAUuauaa -5'
24460 5' -55.5 NC_005264.1 + 5595 0.7 0.750512
Target:  5'- aCGCGCcGAGGGCCgCCACg------ -3'
miRNA:   3'- cGCGCGcCUCCCGGaGGUGauuauaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.