miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 3' -56.4 NC_005264.1 + 39791 0.66 0.914275
Target:  5'- ---uGAUGcaUCggCCCgccaagCCCCUGGUGGGCg -3'
miRNA:   3'- cgucUUAC--AGa-GGG------GGGGAUCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 158817 0.66 0.914275
Target:  5'- ---uGAUGcaUCggCCCgccaagCCCCUGGUGGGCg -3'
miRNA:   3'- cgucUUAC--AGa-GGG------GGGGAUCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 67695 0.66 0.895808
Target:  5'- cCAGAGUGUCUCUgaCCguucugaacgCUUGGUGGGg -3'
miRNA:   3'- cGUCUUACAGAGGg-GG----------GGAUCACCCg -5'
24461 3' -56.4 NC_005264.1 + 57667 0.66 0.895808
Target:  5'- cCGGAucGUuUCUUCCCCCCgagGGUGGa- -3'
miRNA:   3'- cGUCU--UAcAGAGGGGGGGa--UCACCcg -5'
24461 3' -56.4 NC_005264.1 + 35138 0.67 0.870973
Target:  5'- aCGGGAU-UCUUCCCCggCCUggccgcggugugucuGGUGGGCa -3'
miRNA:   3'- cGUCUUAcAGAGGGGG--GGA---------------UCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 67809 0.67 0.859808
Target:  5'- cGCAGAAUGUCauggaauUCCagCCCgcg-GGGCa -3'
miRNA:   3'- -CGUCUUACAG-------AGGggGGGaucaCCCG- -5'
24461 3' -56.4 NC_005264.1 + 28379 0.68 0.827868
Target:  5'- gGCAGAAuUGUC-CCCCaugccgaUCCUGggcGUGGGUa -3'
miRNA:   3'- -CGUCUU-ACAGaGGGG-------GGGAU---CACCCG- -5'
24461 3' -56.4 NC_005264.1 + 71061 0.68 0.802937
Target:  5'- -----uUGUUUCCCCUgCgcgGGUGGGCc -3'
miRNA:   3'- cgucuuACAGAGGGGGgGa--UCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 99813 0.69 0.784987
Target:  5'- cGUAGAGUaUUUCCCCCCCgacuccGUGccuucGGCg -3'
miRNA:   3'- -CGUCUUAcAGAGGGGGGGau----CAC-----CCG- -5'
24461 3' -56.4 NC_005264.1 + 144538 0.69 0.775805
Target:  5'- gGCAGGGcggGUCcuaggcaUUCCCCCUGG-GGGCg -3'
miRNA:   3'- -CGUCUUa--CAGa------GGGGGGGAUCaCCCG- -5'
24461 3' -56.4 NC_005264.1 + 37090 0.7 0.728179
Target:  5'- -aAGAGUGg--CCCgCCCaaggUGGUGGGCa -3'
miRNA:   3'- cgUCUUACagaGGGgGGG----AUCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 156117 0.7 0.728179
Target:  5'- -aAGAGUGg--CCCgCCCaaggUGGUGGGCa -3'
miRNA:   3'- cgUCUUACagaGGGgGGG----AUCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 84688 0.71 0.658323
Target:  5'- cGCGGAuaccauaUUCCCCCUCUuGUGGGUa -3'
miRNA:   3'- -CGUCUuaca---GAGGGGGGGAuCACCCG- -5'
24461 3' -56.4 NC_005264.1 + 107720 0.75 0.443089
Target:  5'- gGCGGggUGUCgaaCCCUCgUGGcuUGGGCa -3'
miRNA:   3'- -CGUCuuACAGag-GGGGGgAUC--ACCCG- -5'
24461 3' -56.4 NC_005264.1 + 68072 1.13 0.001554
Target:  5'- uGCAGAAUGUCUCCCCCCCUAGUGGGCu -3'
miRNA:   3'- -CGUCUUACAGAGGGGGGGAUCACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.