miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 128596 0.67 0.998051
Target:  5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3'
miRNA:   3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 19491 0.67 0.998156
Target:  5'- cGCGCaCC-UGCGAGGuuccagcugcCAGAcGACGAGAa -3'
miRNA:   3'- -CGCG-GGuACGCUCU----------GUUUuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 78761 0.67 0.997304
Target:  5'- uGCGCCCGcUGCuccgcauGAGcCAGGGGGCGGu- -3'
miRNA:   3'- -CGCGGGU-ACG-------CUCuGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 132021 0.67 0.99685
Target:  5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3'
miRNA:   3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 131074 0.68 0.994777
Target:  5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3'
miRNA:   3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 125705 0.68 0.995612
Target:  5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3'
miRNA:   3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 124887 0.68 0.995612
Target:  5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3'
miRNA:   3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 115035 0.68 0.994858
Target:  5'- uGCGCCuUAUGCGccccGGCGAAAGcCGAGGu -3'
miRNA:   3'- -CGCGG-GUACGCu---CUGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 122849 0.68 0.994858
Target:  5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3'
miRNA:   3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 27456 0.68 0.994858
Target:  5'- uGCGCCgAgcgGCGcaGCAAAGGACAu-- -3'
miRNA:   3'- -CGCGGgUa--CGCucUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 6678 0.68 0.995612
Target:  5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3'
miRNA:   3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 5861 0.68 0.995612
Target:  5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3'
miRNA:   3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 63699 0.68 0.995541
Target:  5'- cGCGgcaagguCCCGUGCGAGAacccAGAGGCGu-- -3'
miRNA:   3'- -CGC-------GGGUACGCUCUgu--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 87038 0.68 0.994858
Target:  5'- cGCGCCUAcggacgGCGAcGACcuGGAGGCGAGc -3'
miRNA:   3'- -CGCGGGUa-----CGCU-CUGu-UUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 3823 0.68 0.994858
Target:  5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3'
miRNA:   3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 16029 0.68 0.994858
Target:  5'- cGCGCCUccGUGCagucGAgGGAAGACGGGAg -3'
miRNA:   3'- -CGCGGG--UACGcu--CUgUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 151084 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 117242 0.68 0.994003
Target:  5'- uCGCCCcgGCGAuGCGGAGaACGAGAc -3'
miRNA:   3'- cGCGGGuaCGCUcUGUUUUcUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 135154 0.68 0.994003
Target:  5'- aGCGUCg--GCGAGGCAGAGGcCAGc- -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUUCuGUUuu -5'
24461 5' -48.4 NC_005264.1 + 53616 0.68 0.994858
Target:  5'- aCGCgCgGUGgGAGAUggGAGACAc-- -3'
miRNA:   3'- cGCG-GgUACgCUCUGuuUUCUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.