miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 53616 0.68 0.994858
Target:  5'- aCGCgCgGUGgGAGAUggGAGACAc-- -3'
miRNA:   3'- cGCG-GgUACgCUCUGuuUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 53980 0.66 0.998973
Target:  5'- gGCGCCgGaacggcgGCGAGACu--GGAUAGGGu -3'
miRNA:   3'- -CGCGGgUa------CGCUCUGuuuUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 54177 0.66 0.999325
Target:  5'- cGCGCCCuggccGgGAGACGAcacGAGAaAAAAg -3'
miRNA:   3'- -CGCGGGua---CgCUCUGUU---UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 54251 0.7 0.977724
Target:  5'- cGCGCCaaCGUGuCGAGugGGAgcgGGGCGAGGa -3'
miRNA:   3'- -CGCGG--GUAC-GCUCugUUU---UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 61863 0.76 0.809716
Target:  5'- gGCGCUccaggCAUGgGAGGCAGAAGACGu-- -3'
miRNA:   3'- -CGCGG-----GUACgCUCUGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 63699 0.68 0.995541
Target:  5'- cGCGgcaagguCCCGUGCGAGAacccAGAGGCGu-- -3'
miRNA:   3'- -CGC-------GGGUACGCUCUgu--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 64301 0.69 0.986199
Target:  5'- cGCGUCCAUGCcuccGCAGAGGcCAGAAa -3'
miRNA:   3'- -CGCGGGUACGcuc-UGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 66210 0.66 0.998474
Target:  5'- uGCGCCUccGCGGccaGCGAAGGACu--- -3'
miRNA:   3'- -CGCGGGuaCGCUc--UGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 67106 0.72 0.95457
Target:  5'- cGCGCCUAUGUaGGugGuacggaGAGGACAGAGu -3'
miRNA:   3'- -CGCGGGUACGcUCugU------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 68106 1.09 0.015244
Target:  5'- gGCGCCCAUGCGAGACAAAAGACAAAAc -3'
miRNA:   3'- -CGCGGGUACGCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 70592 0.7 0.983171
Target:  5'- aGCGCgCuugGCGAGGCGGGccuucagagcaugcuGGACGAGAa -3'
miRNA:   3'- -CGCGgGua-CGCUCUGUUU---------------UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 71591 0.66 0.999165
Target:  5'- gGUGUCCAUGC-AGGCcu-GGAUAGAGc -3'
miRNA:   3'- -CGCGGGUACGcUCUGuuuUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 71612 0.67 0.99685
Target:  5'- -aGCCCucaccgGCGAGGCGGc-GGCAGAGa -3'
miRNA:   3'- cgCGGGua----CGCUCUGUUuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 74565 0.7 0.982342
Target:  5'- gGCGCCCAUGU-AGuACGAuucGGACAGGc -3'
miRNA:   3'- -CGCGGGUACGcUC-UGUUu--UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 76154 0.67 0.998156
Target:  5'- cGCGCgCG-GCGAGuaACGAAAGAUAu-- -3'
miRNA:   3'- -CGCGgGUaCGCUC--UGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 78761 0.67 0.997304
Target:  5'- uGCGCCCGcUGCuccgcauGAGcCAGGGGGCGGu- -3'
miRNA:   3'- -CGCGGGU-ACG-------CUCuGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 87038 0.68 0.994858
Target:  5'- cGCGCCUAcggacgGCGAcGACcuGGAGGCGAGc -3'
miRNA:   3'- -CGCGGGUa-----CGCU-CUGu-UUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 93002 0.66 0.998973
Target:  5'- cGCGgCCGUaGCGGGgGCAGucAAGGCAGu- -3'
miRNA:   3'- -CGCgGGUA-CGCUC-UGUU--UUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 95399 0.67 0.997351
Target:  5'- cGCGCUgGUGCaGGGGCuucagauAGGCGGGAa -3'
miRNA:   3'- -CGCGGgUACG-CUCUGuuu----UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 96050 0.71 0.967265
Target:  5'- -gGCCCAgGCGGGACcguguuaggaacgugGGAGGACGAGu -3'
miRNA:   3'- cgCGGGUaCGCUCUG---------------UUUUCUGUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.