Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24461 | 5' | -48.4 | NC_005264.1 | + | 96483 | 0.66 | 0.998745 |
Target: 5'- cGCGUUCGUGauaGAGGCGAGcgucgugcagcAGACAGc- -3' miRNA: 3'- -CGCGGGUACg--CUCUGUUU-----------UCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 97528 | 0.67 | 0.997784 |
Target: 5'- cGCGgCUGUgGCGuGGCAGcGGGCAAGAg -3' miRNA: 3'- -CGCgGGUA-CGCuCUGUUuUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 100557 | 0.67 | 0.998156 |
Target: 5'- -gGCCgAgaucGCGGGACAAGGGcGCAAAGc -3' miRNA: 3'- cgCGGgUa---CGCUCUGUUUUC-UGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 102174 | 0.68 | 0.994003 |
Target: 5'- -aGCCCAgcUGCGcGACGAAGGAaaCGAGc -3' miRNA: 3'- cgCGGGU--ACGCuCUGUUUUCU--GUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 104096 | 0.69 | 0.99195 |
Target: 5'- cGCGCUCAUGaaAGACAu-GGGCGAc- -3' miRNA: 3'- -CGCGGGUACgcUCUGUuuUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 104432 | 0.69 | 0.989375 |
Target: 5'- aGCGCuaCCGUGgGGGGCGAAgucccagucuuGGACAAu- -3' miRNA: 3'- -CGCG--GGUACgCUCUGUUU-----------UCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 109072 | 0.66 | 0.998745 |
Target: 5'- aGCaGCCCA-GCGAuuguGGC-GAAGACGAGGa -3' miRNA: 3'- -CG-CGGGUaCGCU----CUGuUUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 109598 | 0.69 | 0.986199 |
Target: 5'- cGCGCCC--GCGGGGCAcggAAAG-CAAAu -3' miRNA: 3'- -CGCGGGuaCGCUCUGU---UUUCuGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 113914 | 0.67 | 0.997351 |
Target: 5'- aGUGCCCAUcggGCGAGACucu-GGCc--- -3' miRNA: 3'- -CGCGGGUA---CGCUCUGuuuuCUGuuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 115035 | 0.68 | 0.994858 |
Target: 5'- uGCGCCuUAUGCGccccGGCGAAAGcCGAGGu -3' miRNA: 3'- -CGCGG-GUACGCu---CUGUUUUCuGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 116075 | 0.7 | 0.983774 |
Target: 5'- cGCGCCCAaGCGAagaucugguccugcGACgGAAGGACGu-- -3' miRNA: 3'- -CGCGGGUaCGCU--------------CUG-UUUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 117242 | 0.68 | 0.994003 |
Target: 5'- uCGCCCcgGCGAuGCGGAGaACGAGAc -3' miRNA: 3'- cGCGGGuaCGCUcUGUUUUcUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 119271 | 0.66 | 0.998973 |
Target: 5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3' miRNA: 3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 120705 | 0.66 | 0.999311 |
Target: 5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3' miRNA: 3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 121956 | 0.67 | 0.997351 |
Target: 5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3' miRNA: 3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 122703 | 0.69 | 0.987708 |
Target: 5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3' miRNA: 3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 122849 | 0.68 | 0.994858 |
Target: 5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3' miRNA: 3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 123059 | 0.66 | 0.998745 |
Target: 5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3' miRNA: 3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 124887 | 0.68 | 0.995612 |
Target: 5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3' miRNA: 3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 125705 | 0.68 | 0.995612 |
Target: 5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3' miRNA: 3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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