miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 131074 0.68 0.994777
Target:  5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3'
miRNA:   3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 130997 0.66 0.999165
Target:  5'- cGCGCCCAUgucuugccgcGCGcGGCAc--GGCAGAGu -3'
miRNA:   3'- -CGCGGGUA----------CGCuCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 128715 0.72 0.940903
Target:  5'- cGCGCCCGUcaccaGAGGCAgcGAAGGCAu-- -3'
miRNA:   3'- -CGCGGGUAcg---CUCUGU--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 128596 0.67 0.998051
Target:  5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3'
miRNA:   3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 127319 0.71 0.969212
Target:  5'- gGCGCCCGUGgGcGAC-GGGGGCAc-- -3'
miRNA:   3'- -CGCGGGUACgCuCUGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 125705 0.68 0.995612
Target:  5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3'
miRNA:   3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 124887 0.68 0.995612
Target:  5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3'
miRNA:   3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 123059 0.66 0.998745
Target:  5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3'
miRNA:   3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122849 0.68 0.994858
Target:  5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3'
miRNA:   3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 122703 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 121956 0.67 0.997351
Target:  5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3'
miRNA:   3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 120705 0.66 0.999311
Target:  5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3'
miRNA:   3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 119271 0.66 0.998973
Target:  5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3'
miRNA:   3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 117242 0.68 0.994003
Target:  5'- uCGCCCcgGCGAuGCGGAGaACGAGAc -3'
miRNA:   3'- cGCGGGuaCGCUcUGUUUUcUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 116075 0.7 0.983774
Target:  5'- cGCGCCCAaGCGAagaucugguccugcGACgGAAGGACGu-- -3'
miRNA:   3'- -CGCGGGUaCGCU--------------CUG-UUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 115035 0.68 0.994858
Target:  5'- uGCGCCuUAUGCGccccGGCGAAAGcCGAGGu -3'
miRNA:   3'- -CGCGG-GUACGCu---CUGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 113914 0.67 0.997351
Target:  5'- aGUGCCCAUcggGCGAGACucu-GGCc--- -3'
miRNA:   3'- -CGCGGGUA---CGCUCUGuuuuCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 109598 0.69 0.986199
Target:  5'- cGCGCCC--GCGGGGCAcggAAAG-CAAAu -3'
miRNA:   3'- -CGCGGGuaCGCUCUGU---UUUCuGUUUu -5'
24461 5' -48.4 NC_005264.1 + 109072 0.66 0.998745
Target:  5'- aGCaGCCCA-GCGAuuguGGC-GAAGACGAGGa -3'
miRNA:   3'- -CG-CGGGUaCGCU----CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 104432 0.69 0.989375
Target:  5'- aGCGCuaCCGUGgGGGGCGAAgucccagucuuGGACAAu- -3'
miRNA:   3'- -CGCG--GGUACgCUCUGUUU-----------UCUGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.