miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 49911 0.7 0.98436
Target:  5'- cGCGCCCAaaucccgcugGCGGcGACuGAGGAUGAGAa -3'
miRNA:   3'- -CGCGGGUa---------CGCU-CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 157839 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 16029 0.68 0.994858
Target:  5'- cGCGCCUccGUGCagucGAgGGAAGACGGGAg -3'
miRNA:   3'- -CGCGGG--UACGcu--CUgUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 115035 0.68 0.994858
Target:  5'- uGCGCCuUAUGCGccccGGCGAAAGcCGAGGu -3'
miRNA:   3'- -CGCGG-GUACGCu---CUGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 131074 0.68 0.994777
Target:  5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3'
miRNA:   3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 135154 0.68 0.994003
Target:  5'- aGCGUCg--GCGAGGCAGAGGcCAGc- -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUUCuGUUuu -5'
24461 5' -48.4 NC_005264.1 + 117242 0.68 0.994003
Target:  5'- uCGCCCcgGCGAuGCGGAGaACGAGAc -3'
miRNA:   3'- cGCGGGuaCGCUcUGUUUUcUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 151084 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 2203 0.69 0.992399
Target:  5'- gGCGCCCAUGCGcGcUAAggguuuccccuaaccGAGACGAc- -3'
miRNA:   3'- -CGCGGGUACGCuCuGUU---------------UUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 149437 0.69 0.99195
Target:  5'- cGCGCCgGUGCGGagagcugcGGCGGAGGAgGu-- -3'
miRNA:   3'- -CGCGGgUACGCU--------CUGUUUUCUgUuuu -5'
24461 5' -48.4 NC_005264.1 + 104096 0.69 0.99195
Target:  5'- cGCGCUCAUGaaAGACAu-GGGCGAc- -3'
miRNA:   3'- -CGCGGGUACgcUCUGUuuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 27901 0.69 0.987867
Target:  5'- aGCGUCUcgGCGAGGguGAGcGACGAc- -3'
miRNA:   3'- -CGCGGGuaCGCUCUguUUU-CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122703 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 244 0.66 0.998973
Target:  5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3'
miRNA:   3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 45123 0.66 0.998973
Target:  5'- uCGUCCGcGUGGGGCGAAgaaccAGACAGGc -3'
miRNA:   3'- cGCGGGUaCGCUCUGUUU-----UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 120705 0.66 0.999311
Target:  5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3'
miRNA:   3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 39689 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 54177 0.66 0.999325
Target:  5'- cGCGCCCuggccGgGAGACGAcacGAGAaAAAAg -3'
miRNA:   3'- -CGCGGGua---CgCUCUGUU---UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 13562 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 68106 1.09 0.015244
Target:  5'- gGCGCCCAUGCGAGACAAAAGACAAAAc -3'
miRNA:   3'- -CGCGGGUACGCUCUGUUUUCUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.