Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24461 | 5' | -48.4 | NC_005264.1 | + | 13283 | 0.66 | 0.998745 |
Target: 5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3' miRNA: 3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 96483 | 0.66 | 0.998745 |
Target: 5'- cGCGUUCGUGauaGAGGCGAGcgucgugcagcAGACAGc- -3' miRNA: 3'- -CGCGGGUACg--CUCUGUUU-----------UCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 244 | 0.66 | 0.998973 |
Target: 5'- gGCGCCaCA-GCGAGGCGGGccgcucGACAu-- -3' miRNA: 3'- -CGCGG-GUaCGCUCUGUUUu-----CUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 45123 | 0.66 | 0.998973 |
Target: 5'- uCGUCCGcGUGGGGCGAAgaaccAGACAGGc -3' miRNA: 3'- cGCGGGUaCGCUCUGUUU-----UCUGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 120705 | 0.66 | 0.999311 |
Target: 5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3' miRNA: 3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 39689 | 0.66 | 0.999325 |
Target: 5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3' miRNA: 3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 54177 | 0.66 | 0.999325 |
Target: 5'- cGCGCCCuggccGgGAGACGAcacGAGAaAAAAg -3' miRNA: 3'- -CGCGGGua---CgCUCUGUU---UUCUgUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 13562 | 0.66 | 0.999325 |
Target: 5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3' miRNA: 3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 128596 | 0.67 | 0.998051 |
Target: 5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3' miRNA: 3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 97528 | 0.67 | 0.997784 |
Target: 5'- cGCGgCUGUgGCGuGGCAGcGGGCAAGAg -3' miRNA: 3'- -CGCgGGUA-CGCuCUGUUuUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 63699 | 0.68 | 0.995541 |
Target: 5'- cGCGgcaagguCCCGUGCGAGAacccAGAGGCGu-- -3' miRNA: 3'- -CGC-------GGGUACGCUCUgu--UUUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 5861 | 0.68 | 0.995612 |
Target: 5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3' miRNA: 3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 6678 | 0.68 | 0.995612 |
Target: 5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3' miRNA: 3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 26972 | 0.67 | 0.99685 |
Target: 5'- -gGCCCAUGCGucuGAuCAGcgGAGGCAc-- -3' miRNA: 3'- cgCGGGUACGCu--CU-GUU--UUCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 12994 | 0.67 | 0.99685 |
Target: 5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3' miRNA: 3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 71612 | 0.67 | 0.99685 |
Target: 5'- -aGCCCucaccgGCGAGGCGGc-GGCAGAGa -3' miRNA: 3'- cgCGGGua----CGCUCUGUUuuCUGUUUU- -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 139855 | 0.67 | 0.99685 |
Target: 5'- cGCGuCCCAUGU--GGCAcgGGGCGAAc -3' miRNA: 3'- -CGC-GGGUACGcuCUGUuuUCUGUUUu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 25529 | 0.67 | 0.997351 |
Target: 5'- aGCGCCCAUaagGCGGcGCGGAcaAGGCGc-- -3' miRNA: 3'- -CGCGGGUA---CGCUcUGUUU--UCUGUuuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 2930 | 0.67 | 0.997351 |
Target: 5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3' miRNA: 3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5' |
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24461 | 5' | -48.4 | NC_005264.1 | + | 95399 | 0.67 | 0.997351 |
Target: 5'- cGCGCUgGUGCaGGGGCuucagauAGGCGGGAa -3' miRNA: 3'- -CGCGGgUACG-CUCUGuuu----UCUGUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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