miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 63699 0.68 0.995541
Target:  5'- cGCGgcaagguCCCGUGCGAGAacccAGAGGCGu-- -3'
miRNA:   3'- -CGC-------GGGUACGCUCUgu--UUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 26972 0.67 0.99685
Target:  5'- -gGCCCAUGCGucuGAuCAGcgGAGGCAc-- -3'
miRNA:   3'- cgCGGGUACGCu--CU-GUU--UUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 109072 0.66 0.998745
Target:  5'- aGCaGCCCA-GCGAuuguGGC-GAAGACGAGGa -3'
miRNA:   3'- -CG-CGGGUaCGCU----CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 39689 0.66 0.999325
Target:  5'- aGCGgCCGUGUuuGGCAGAggGGACAc-- -3'
miRNA:   3'- -CGCgGGUACGcuCUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 109598 0.69 0.986199
Target:  5'- cGCGCCC--GCGGGGCAcggAAAG-CAAAu -3'
miRNA:   3'- -CGCGGGuaCGCUCUGU---UUUCuGUUUu -5'
24461 5' -48.4 NC_005264.1 + 102174 0.68 0.994003
Target:  5'- -aGCCCAgcUGCGcGACGAAGGAaaCGAGc -3'
miRNA:   3'- cgCGGGU--ACGCuCUGUUUUCU--GUUUu -5'
24461 5' -48.4 NC_005264.1 + 71612 0.67 0.99685
Target:  5'- -aGCCCucaccgGCGAGGCGGc-GGCAGAGa -3'
miRNA:   3'- cgCGGGua----CGCUCUGUUuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 54177 0.66 0.999325
Target:  5'- cGCGCCCuggccGgGAGACGAcacGAGAaAAAAg -3'
miRNA:   3'- -CGCGGGua---CgCUCUGUU---UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 12047 0.68 0.994777
Target:  5'- aGCGCCCgcgaaccaucccgGUGCGAG-CcAAAGGCGc-- -3'
miRNA:   3'- -CGCGGG-------------UACGCUCuGuUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 13562 0.66 0.999325
Target:  5'- aGCGgCgCggGCGGGACcgggGAAGGGCGGAAc -3'
miRNA:   3'- -CGCgG-GuaCGCUCUG----UUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 12994 0.67 0.99685
Target:  5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3'
miRNA:   3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 87038 0.68 0.994858
Target:  5'- cGCGCCUAcggacgGCGAcGACcuGGAGGCGAGc -3'
miRNA:   3'- -CGCGGGUa-----CGCU-CUGu-UUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 2930 0.67 0.997351
Target:  5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3'
miRNA:   3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 128596 0.67 0.998051
Target:  5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3'
miRNA:   3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 96483 0.66 0.998745
Target:  5'- cGCGUUCGUGauaGAGGCGAGcgucgugcagcAGACAGc- -3'
miRNA:   3'- -CGCGGGUACg--CUCUGUUU-----------UCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 120705 0.66 0.999311
Target:  5'- cGCGCCgacaaagCcgGCGgucGGGCGGAGGACGGu- -3'
miRNA:   3'- -CGCGG-------GuaCGC---UCUGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 54251 0.7 0.977724
Target:  5'- cGCGCCaaCGUGuCGAGugGGAgcgGGGCGAGGa -3'
miRNA:   3'- -CGCGG--GUAC-GCUCugUUU---UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 64301 0.69 0.986199
Target:  5'- cGCGUCCAUGCcuccGCAGAGGcCAGAAa -3'
miRNA:   3'- -CGCGGGUACGcuc-UGUUUUCuGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 104432 0.69 0.989375
Target:  5'- aGCGCuaCCGUGgGGGGCGAAgucccagucuuGGACAAu- -3'
miRNA:   3'- -CGCG--GGUACgCUCUGUUU-----------UCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 32057 0.68 0.993036
Target:  5'- gGCGCCCGga-GAGACccAAGAGuGCGAAAg -3'
miRNA:   3'- -CGCGGGUacgCUCUG--UUUUC-UGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.