miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 102174 0.68 0.994003
Target:  5'- -aGCCCAgcUGCGcGACGAAGGAaaCGAGc -3'
miRNA:   3'- cgCGGGU--ACGCuCUGUUUUCU--GUUUu -5'
24461 5' -48.4 NC_005264.1 + 159579 0.69 0.990732
Target:  5'- aUGCCCAcccaccgagaaGCGAGACGAgcGACGGAc -3'
miRNA:   3'- cGCGGGUa----------CGCUCUGUUuuCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 4032 0.66 0.998745
Target:  5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3'
miRNA:   3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 36465 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 109072 0.66 0.998745
Target:  5'- aGCaGCCCA-GCGAuuguGGC-GAAGACGAGGa -3'
miRNA:   3'- -CG-CGGGUaCGCU----CUGuUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 45346 0.79 0.643967
Target:  5'- cGCGCCCGaGaCGAGGCGAAAGGgAGGAg -3'
miRNA:   3'- -CGCGGGUaC-GCUCUGUUUUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 40063 0.72 0.940903
Target:  5'- aGCGCCCcgGCG--GCAAGAGGCc--- -3'
miRNA:   3'- -CGCGGGuaCGCucUGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 67106 0.72 0.95457
Target:  5'- cGCGCCUAUGUaGGugGuacggaGAGGACAGAGu -3'
miRNA:   3'- -CGCGGGUACGcUCugU------UUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 74565 0.7 0.982342
Target:  5'- gGCGCCCAUGU-AGuACGAuucGGACAGGc -3'
miRNA:   3'- -CGCGGGUACGcUC-UGUUu--UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 53616 0.68 0.994858
Target:  5'- aCGCgCgGUGgGAGAUggGAGACAc-- -3'
miRNA:   3'- cGCG-GgUACgCUCUGuuUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 109598 0.69 0.986199
Target:  5'- cGCGCCC--GCGGGGCAcggAAAG-CAAAu -3'
miRNA:   3'- -CGCGGGuaCGCUCUGU---UUUCuGUUUu -5'
24461 5' -48.4 NC_005264.1 + 128596 0.67 0.998051
Target:  5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3'
miRNA:   3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 155492 0.71 0.969212
Target:  5'- -aGCCgAgucUGaCGAGGCGGAGGACGAAGa -3'
miRNA:   3'- cgCGGgU---AC-GCUCUGUUUUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 157643 0.66 0.999325
Target:  5'- uCGCCgCGgcGCGAGACAc--GACAGGAg -3'
miRNA:   3'- cGCGG-GUa-CGCUCUGUuuuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 157839 0.7 0.98436
Target:  5'- gGCGaCCCcgGCGcGGACGAGAacGACGAc- -3'
miRNA:   3'- -CGC-GGGuaCGC-UCUGUUUU--CUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122703 0.69 0.987708
Target:  5'- gGCGgCCGUcucggcgGCGAGACGagGAGGACGGc- -3'
miRNA:   3'- -CGCgGGUA-------CGCUCUGU--UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 78761 0.67 0.997304
Target:  5'- uGCGCCCGcUGCuccgcauGAGcCAGGGGGCGGu- -3'
miRNA:   3'- -CGCGGGU-ACG-------CUCuGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 122849 0.68 0.994858
Target:  5'- cGgGCCCggGCGGGGCcgcAGGAgGAAAu -3'
miRNA:   3'- -CgCGGGuaCGCUCUGuu-UUCUgUUUU- -5'
24461 5' -48.4 NC_005264.1 + 124887 0.68 0.995612
Target:  5'- uCGCCCuauCGAGGgGGAGGGCGAGu -3'
miRNA:   3'- cGCGGGuacGCUCUgUUUUCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 125705 0.68 0.995612
Target:  5'- gGCGCCagcaGCGAGGCc-GAGACGGc- -3'
miRNA:   3'- -CGCGGgua-CGCUCUGuuUUCUGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.