miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24461 5' -48.4 NC_005264.1 + 13283 0.66 0.998745
Target:  5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5'
24461 5' -48.4 NC_005264.1 + 96483 0.66 0.998745
Target:  5'- cGCGUUCGUGauaGAGGCGAGcgucgugcagcAGACAGc- -3'
miRNA:   3'- -CGCGGGUACg--CUCUGUUU-----------UCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 123059 0.66 0.998745
Target:  5'- cGgGCCgAUGCaucagGAGACGAuGGGCGAc- -3'
miRNA:   3'- -CgCGGgUACG-----CUCUGUUuUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 132310 0.66 0.998745
Target:  5'- cGCGCCa--GCGAGGCGGGucGugGAGc -3'
miRNA:   3'- -CGCGGguaCGCUCUGUUUu-CugUUUu -5'
24461 5' -48.4 NC_005264.1 + 66210 0.66 0.998474
Target:  5'- uGCGCCUccGCGGccaGCGAAGGACu--- -3'
miRNA:   3'- -CGCGGGuaCGCUc--UGUUUUCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 46604 0.67 0.998156
Target:  5'- cUGUCCcUGCGGGGC-GAGGACGGc- -3'
miRNA:   3'- cGCGGGuACGCUCUGuUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 100557 0.67 0.998156
Target:  5'- -gGCCgAgaucGCGGGACAAGGGcGCAAAGc -3'
miRNA:   3'- cgCGGgUa---CGCUCUGUUUUC-UGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 19491 0.67 0.998156
Target:  5'- cGCGCaCC-UGCGAGGuuccagcugcCAGAcGACGAGAa -3'
miRNA:   3'- -CGCG-GGuACGCUCU----------GUUUuCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 76154 0.67 0.998156
Target:  5'- cGCGCgCG-GCGAGuaACGAAAGAUAu-- -3'
miRNA:   3'- -CGCGgGUaCGCUC--UGUUUUCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 128596 0.67 0.998051
Target:  5'- cGCGCgCAcgagGCGGGACGAAacccguccgucuugGGACAc-- -3'
miRNA:   3'- -CGCGgGUa---CGCUCUGUUU--------------UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 97528 0.67 0.997784
Target:  5'- cGCGgCUGUgGCGuGGCAGcGGGCAAGAg -3'
miRNA:   3'- -CGCgGGUA-CGCuCUGUUuUCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 22831 0.67 0.997784
Target:  5'- -aGCCUcaGCGAGACGGGuacGGACGGGc -3'
miRNA:   3'- cgCGGGuaCGCUCUGUUU---UCUGUUUu -5'
24461 5' -48.4 NC_005264.1 + 142862 0.67 0.997351
Target:  5'- aCGUCCuUGCGAG-CGAAggcgcuucuGGACAAGAg -3'
miRNA:   3'- cGCGGGuACGCUCuGUUU---------UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 121956 0.67 0.997351
Target:  5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3'
miRNA:   3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 113914 0.67 0.997351
Target:  5'- aGUGCCCAUcggGCGAGACucu-GGCc--- -3'
miRNA:   3'- -CGCGGGUA---CGCUCUGuuuuCUGuuuu -5'
24461 5' -48.4 NC_005264.1 + 25529 0.67 0.997351
Target:  5'- aGCGCCCAUaagGCGGcGCGGAcaAGGCGc-- -3'
miRNA:   3'- -CGCGGGUA---CGCUcUGUUU--UCUGUuuu -5'
24461 5' -48.4 NC_005264.1 + 2930 0.67 0.997351
Target:  5'- uCGCCgA-GCGAGACGgacggGAAGACGGc- -3'
miRNA:   3'- cGCGGgUaCGCUCUGU-----UUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 95399 0.67 0.997351
Target:  5'- cGCGCUgGUGCaGGGGCuucagauAGGCGGGAa -3'
miRNA:   3'- -CGCGGgUACG-CUCUGuuu----UCUGUUUU- -5'
24461 5' -48.4 NC_005264.1 + 78761 0.67 0.997304
Target:  5'- uGCGCCCGcUGCuccgcauGAGcCAGGGGGCGGu- -3'
miRNA:   3'- -CGCGGGU-ACG-------CUCuGUUUUCUGUUuu -5'
24461 5' -48.4 NC_005264.1 + 132021 0.67 0.99685
Target:  5'- -aGCCCGUuCGAG-CAcGAGGCGGAAa -3'
miRNA:   3'- cgCGGGUAcGCUCuGUuUUCUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.