miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24463 3' -53.1 NC_005264.1 + 56906 0.66 0.969863
Target:  5'- uGGGCGAGCauuaUGgGGC-GGCGuAcgUGCGu -3'
miRNA:   3'- -CUCGUUUG----ACgCCGaCCGC-UuaACGC- -5'
24463 3' -53.1 NC_005264.1 + 66200 0.66 0.966731
Target:  5'- cGGCGGGCggugcgccuccGCGGCcagcgaaggacuUGGCGAGcUGCGg -3'
miRNA:   3'- cUCGUUUGa----------CGCCG------------ACCGCUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 37525 0.66 0.963722
Target:  5'- gGAG-AAGCUGCGGCgucuugcaagcgucaGGCGAA--GCGa -3'
miRNA:   3'- -CUCgUUUGACGCCGa--------------CCGCUUaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 55608 0.66 0.963377
Target:  5'- uGGGaAAGCcGCGGCUGGCGccGAaUGCc -3'
miRNA:   3'- -CUCgUUUGaCGCCGACCGC--UUaACGc -5'
24463 3' -53.1 NC_005264.1 + 125981 0.66 0.963377
Target:  5'- uGGGCGuGCUGCGGaggaggGGCaGAcaGUUGCu -3'
miRNA:   3'- -CUCGUuUGACGCCga----CCG-CU--UAACGc -5'
24463 3' -53.1 NC_005264.1 + 34522 0.66 0.959793
Target:  5'- aAGCAGGaUGCGGUUgGGCGuug-GCGg -3'
miRNA:   3'- cUCGUUUgACGCCGA-CCGCuuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 119423 0.66 0.959793
Target:  5'- -uGC--ACUcGCGGCUGGCGg---GCGa -3'
miRNA:   3'- cuCGuuUGA-CGCCGACCGCuuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 153549 0.66 0.959793
Target:  5'- aAGCAGGaUGCGGUUgGGCGuug-GCGg -3'
miRNA:   3'- cUCGUUUgACGCCGA-CCGCuuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 138319 0.67 0.955975
Target:  5'- aGGCAAGUUGUGGUcaUGGCGcg-UGCGc -3'
miRNA:   3'- cUCGUUUGACGCCG--ACCGCuuaACGC- -5'
24463 3' -53.1 NC_005264.1 + 25327 0.67 0.955975
Target:  5'- uAGCAAAaaauccgGCGGCcGGaCGAGUUGgGg -3'
miRNA:   3'- cUCGUUUga-----CGCCGaCC-GCUUAACgC- -5'
24463 3' -53.1 NC_005264.1 + 94405 0.67 0.951918
Target:  5'- -cGCAGACcGCGGC--GCGGAcUGCGc -3'
miRNA:   3'- cuCGUUUGaCGCCGacCGCUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 119115 0.67 0.947617
Target:  5'- gGGGCGGGCU-CuGCUGGgGGAggGCGa -3'
miRNA:   3'- -CUCGUUUGAcGcCGACCgCUUaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 70508 0.67 0.947617
Target:  5'- gGAGCAAGaUGCGGUcuaUGGCGcugGAUgGCGc -3'
miRNA:   3'- -CUCGUUUgACGCCG---ACCGC---UUAaCGC- -5'
24463 3' -53.1 NC_005264.1 + 74457 0.67 0.943069
Target:  5'- -cGCGGGCaUGCGGCUGGCcguGAAUccuaGCc -3'
miRNA:   3'- cuCGUUUG-ACGCCGACCG---CUUAa---CGc -5'
24463 3' -53.1 NC_005264.1 + 162692 0.67 0.938272
Target:  5'- cGGCGcGCUGCGcGCcGGCGuuaagGCGg -3'
miRNA:   3'- cUCGUuUGACGC-CGaCCGCuuaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 43666 0.67 0.938272
Target:  5'- cGGCGcGCUGCGcGCcGGCGuuaagGCGg -3'
miRNA:   3'- cUCGUuUGACGC-CGaCCGCuuaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 48385 0.67 0.938272
Target:  5'- cGGUAGACUGgGGCgucgGGCGGcg-GCc -3'
miRNA:   3'- cUCGUUUGACgCCGa---CCGCUuaaCGc -5'
24463 3' -53.1 NC_005264.1 + 129595 0.67 0.933223
Target:  5'- -uGCAGgcGCUGCGGCgcggcGGCGAA--GCu -3'
miRNA:   3'- cuCGUU--UGACGCCGa----CCGCUUaaCGc -5'
24463 3' -53.1 NC_005264.1 + 75090 0.68 0.927922
Target:  5'- -cGCGGcGCUGCGGCaGGCGccg-GCGc -3'
miRNA:   3'- cuCGUU-UGACGCCGaCCGCuuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 156460 0.68 0.922367
Target:  5'- gGAGCAGcACgaGCGGCUGGUcgccGAGUucaUGCu -3'
miRNA:   3'- -CUCGUU-UGa-CGCCGACCG----CUUA---ACGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.