miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24463 3' -53.1 NC_005264.1 + 70584 0.68 0.922367
Target:  5'- uGGCGAAgaGCGcGCuUGGCGAg--GCGg -3'
miRNA:   3'- cUCGUUUgaCGC-CG-ACCGCUuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 156460 0.68 0.922367
Target:  5'- gGAGCAGcACgaGCGGCUGGUcgccGAGUucaUGCu -3'
miRNA:   3'- -CUCGUU-UGa-CGCCGACCG----CUUA---ACGc -5'
24463 3' -53.1 NC_005264.1 + 150617 0.68 0.916559
Target:  5'- gGGGCGAGuCUGCucuCUGGCGAGgcgGCGc -3'
miRNA:   3'- -CUCGUUU-GACGcc-GACCGCUUaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 31590 0.68 0.916559
Target:  5'- gGGGCGAGuCUGCucuCUGGCGAGgcgGCGc -3'
miRNA:   3'- -CUCGUUU-GACGcc-GACCGCUUaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 154612 0.68 0.910499
Target:  5'- gGAGCu-GCUGCGGCUucGGCcGAUggccGCGu -3'
miRNA:   3'- -CUCGuuUGACGCCGA--CCGcUUAa---CGC- -5'
24463 3' -53.1 NC_005264.1 + 98772 0.68 0.910499
Target:  5'- cGGCucuGCUGCGGCUGacaGAGcUGCGc -3'
miRNA:   3'- cUCGuu-UGACGCCGACcg-CUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 35585 0.68 0.910499
Target:  5'- gGAGCu-GCUGCGGCUucGGCcGAUggccGCGu -3'
miRNA:   3'- -CUCGuuUGACGCCGA--CCGcUUAa---CGC- -5'
24463 3' -53.1 NC_005264.1 + 36805 0.69 0.890828
Target:  5'- uAGUugucuCUGCGGCgcaGGCGAGgcGCGg -3'
miRNA:   3'- cUCGuuu--GACGCCGa--CCGCUUaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 124470 0.69 0.883784
Target:  5'- aGAGCGAGgUGCGGaagcGGCGAGaaaaaGCGg -3'
miRNA:   3'- -CUCGUUUgACGCCga--CCGCUUaa---CGC- -5'
24463 3' -53.1 NC_005264.1 + 33972 0.69 0.876504
Target:  5'- -cGCAAGCUGUccGCUGGCGAccagaGCGg -3'
miRNA:   3'- cuCGUUUGACGc-CGACCGCUuaa--CGC- -5'
24463 3' -53.1 NC_005264.1 + 41620 0.69 0.868993
Target:  5'- cGAGCucguAGaaGCGGCUGGCcAGaUGCGg -3'
miRNA:   3'- -CUCGu---UUgaCGCCGACCGcUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 156415 0.7 0.845134
Target:  5'- aGGGUucagugcCUGCGGCUGGCGGcg-GUGa -3'
miRNA:   3'- -CUCGuuu----GACGCCGACCGCUuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 40796 0.7 0.845134
Target:  5'- -uGCAAACUGCGGggGGCGcuggauGAUUaGCGc -3'
miRNA:   3'- cuCGUUUGACGCCgaCCGC------UUAA-CGC- -5'
24463 3' -53.1 NC_005264.1 + 79214 0.7 0.845134
Target:  5'- gGGGCuAGGCUGCGuGCaGGCGGcg-GCGg -3'
miRNA:   3'- -CUCG-UUUGACGC-CGaCCGCUuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 159822 0.7 0.845134
Target:  5'- -uGCAAACUGCGGggGGCGcuggauGAUUaGCGc -3'
miRNA:   3'- cuCGUUUGACGCCgaCCGC------UUAA-CGC- -5'
24463 3' -53.1 NC_005264.1 + 92484 0.71 0.810494
Target:  5'- cGGGUAcACUGCGG-UGGCGG--UGCGc -3'
miRNA:   3'- -CUCGUuUGACGCCgACCGCUuaACGC- -5'
24463 3' -53.1 NC_005264.1 + 142852 0.71 0.782686
Target:  5'- cGAGCGAGC-GCGGUcGGUuuGUUGCGu -3'
miRNA:   3'- -CUCGUUUGaCGCCGaCCGcuUAACGC- -5'
24463 3' -53.1 NC_005264.1 + 14107 0.71 0.773118
Target:  5'- cGGGCAuauccauGCUcgGCGGUUGGCGAGguaGCGu -3'
miRNA:   3'- -CUCGUu------UGA--CGCCGACCGCUUaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 156997 0.73 0.713256
Target:  5'- aGGGCGAuaACcGCGGCcaGGCGAGUgGCGg -3'
miRNA:   3'- -CUCGUU--UGaCGCCGa-CCGCUUAaCGC- -5'
24463 3' -53.1 NC_005264.1 + 37970 0.73 0.713256
Target:  5'- aGGGCGAuaACcGCGGCcaGGCGAGUgGCGg -3'
miRNA:   3'- -CUCGUU--UGaCGCCGa-CCGCUUAaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.