miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24463 3' -53.1 NC_005264.1 + 14107 0.71 0.773118
Target:  5'- cGGGCAuauccauGCUcgGCGGUUGGCGAGguaGCGu -3'
miRNA:   3'- -CUCGUu------UGA--CGCCGACCGCUUaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 25327 0.67 0.955975
Target:  5'- uAGCAAAaaauccgGCGGCcGGaCGAGUUGgGg -3'
miRNA:   3'- cUCGUUUga-----CGCCGaCC-GCUUAACgC- -5'
24463 3' -53.1 NC_005264.1 + 31590 0.68 0.916559
Target:  5'- gGGGCGAGuCUGCucuCUGGCGAGgcgGCGc -3'
miRNA:   3'- -CUCGUUU-GACGcc-GACCGCUUaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 33972 0.69 0.876504
Target:  5'- -cGCAAGCUGUccGCUGGCGAccagaGCGg -3'
miRNA:   3'- cuCGUUUGACGc-CGACCGCUuaa--CGC- -5'
24463 3' -53.1 NC_005264.1 + 34522 0.66 0.959793
Target:  5'- aAGCAGGaUGCGGUUgGGCGuug-GCGg -3'
miRNA:   3'- cUCGUUUgACGCCGA-CCGCuuaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 35585 0.68 0.910499
Target:  5'- gGAGCu-GCUGCGGCUucGGCcGAUggccGCGu -3'
miRNA:   3'- -CUCGuuUGACGCCGA--CCGcUUAa---CGC- -5'
24463 3' -53.1 NC_005264.1 + 36805 0.69 0.890828
Target:  5'- uAGUugucuCUGCGGCgcaGGCGAGgcGCGg -3'
miRNA:   3'- cUCGuuu--GACGCCGa--CCGCUUaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 37433 0.68 0.922367
Target:  5'- gGAGCAGcACgaGCGGCUGGUcgccGAGUucaUGCu -3'
miRNA:   3'- -CUCGUU-UGa-CGCCGACCG----CUUA---ACGc -5'
24463 3' -53.1 NC_005264.1 + 37525 0.66 0.963722
Target:  5'- gGAG-AAGCUGCGGCgucuugcaagcgucaGGCGAA--GCGa -3'
miRNA:   3'- -CUCgUUUGACGCCGa--------------CCGCUUaaCGC- -5'
24463 3' -53.1 NC_005264.1 + 37970 0.73 0.713256
Target:  5'- aGGGCGAuaACcGCGGCcaGGCGAGUgGCGg -3'
miRNA:   3'- -CUCGUU--UGaCGCCGa-CCGCUUAaCGC- -5'
24463 3' -53.1 NC_005264.1 + 40796 0.7 0.845134
Target:  5'- -uGCAAACUGCGGggGGCGcuggauGAUUaGCGc -3'
miRNA:   3'- cuCGUUUGACGCCgaCCGC------UUAA-CGC- -5'
24463 3' -53.1 NC_005264.1 + 41620 0.69 0.868993
Target:  5'- cGAGCucguAGaaGCGGCUGGCcAGaUGCGg -3'
miRNA:   3'- -CUCGu---UUgaCGCCGACCGcUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 43666 0.67 0.938272
Target:  5'- cGGCGcGCUGCGcGCcGGCGuuaagGCGg -3'
miRNA:   3'- cUCGUuUGACGC-CGaCCGCuuaa-CGC- -5'
24463 3' -53.1 NC_005264.1 + 48385 0.67 0.938272
Target:  5'- cGGUAGACUGgGGCgucgGGCGGcg-GCc -3'
miRNA:   3'- cUCGUUUGACgCCGa---CCGCUuaaCGc -5'
24463 3' -53.1 NC_005264.1 + 55608 0.66 0.963377
Target:  5'- uGGGaAAGCcGCGGCUGGCGccGAaUGCc -3'
miRNA:   3'- -CUCgUUUGaCGCCGACCGC--UUaACGc -5'
24463 3' -53.1 NC_005264.1 + 56906 0.66 0.969863
Target:  5'- uGGGCGAGCauuaUGgGGC-GGCGuAcgUGCGu -3'
miRNA:   3'- -CUCGUUUG----ACgCCGaCCGC-UuaACGC- -5'
24463 3' -53.1 NC_005264.1 + 66200 0.66 0.966731
Target:  5'- cGGCGGGCggugcgccuccGCGGCcagcgaaggacuUGGCGAGcUGCGg -3'
miRNA:   3'- cUCGUUUGa----------CGCCG------------ACCGCUUaACGC- -5'
24463 3' -53.1 NC_005264.1 + 67425 1.09 0.005103
Target:  5'- aGAGCAAACUGCGGCUGGCGAAUUGCGu -3'
miRNA:   3'- -CUCGUUUGACGCCGACCGCUUAACGC- -5'
24463 3' -53.1 NC_005264.1 + 70508 0.67 0.947617
Target:  5'- gGAGCAAGaUGCGGUcuaUGGCGcugGAUgGCGc -3'
miRNA:   3'- -CUCGUUUgACGCCG---ACCGC---UUAaCGC- -5'
24463 3' -53.1 NC_005264.1 + 70584 0.68 0.922367
Target:  5'- uGGCGAAgaGCGcGCuUGGCGAg--GCGg -3'
miRNA:   3'- cUCGUUUgaCGC-CG-ACCGCUuaaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.