Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24463 | 3' | -53.1 | NC_005264.1 | + | 133082 | 0.74 | 0.61916 |
Target: 5'- cGAGCGAGCUGUGGU--GCGAGcUGCa -3' miRNA: 3'- -CUCGUUUGACGCCGacCGCUUaACGc -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 156460 | 0.68 | 0.922367 |
Target: 5'- gGAGCAGcACgaGCGGCUGGUcgccGAGUucaUGCu -3' miRNA: 3'- -CUCGUU-UGa-CGCCGACCG----CUUA---ACGc -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 75090 | 0.68 | 0.927922 |
Target: 5'- -cGCGGcGCUGCGGCaGGCGccg-GCGc -3' miRNA: 3'- cuCGUU-UGACGCCGaCCGCuuaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 162692 | 0.67 | 0.938272 |
Target: 5'- cGGCGcGCUGCGcGCcGGCGuuaagGCGg -3' miRNA: 3'- cUCGUuUGACGC-CGaCCGCuuaa-CGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 94405 | 0.67 | 0.951918 |
Target: 5'- -cGCAGACcGCGGC--GCGGAcUGCGc -3' miRNA: 3'- cuCGUUUGaCGCCGacCGCUUaACGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 25327 | 0.67 | 0.955975 |
Target: 5'- uAGCAAAaaauccgGCGGCcGGaCGAGUUGgGg -3' miRNA: 3'- cUCGUUUga-----CGCCGaCC-GCUUAACgC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 153549 | 0.66 | 0.959793 |
Target: 5'- aAGCAGGaUGCGGUUgGGCGuug-GCGg -3' miRNA: 3'- cUCGUUUgACGCCGA-CCGCuuaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 37525 | 0.66 | 0.963722 |
Target: 5'- gGAG-AAGCUGCGGCgucuugcaagcgucaGGCGAA--GCGa -3' miRNA: 3'- -CUCgUUUGACGCCGa--------------CCGCUUaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 66200 | 0.66 | 0.966731 |
Target: 5'- cGGCGGGCggugcgccuccGCGGCcagcgaaggacuUGGCGAGcUGCGg -3' miRNA: 3'- cUCGUUUGa----------CGCCG------------ACCGCUUaACGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 70584 | 0.68 | 0.922367 |
Target: 5'- uGGCGAAgaGCGcGCuUGGCGAg--GCGg -3' miRNA: 3'- cUCGUUUgaCGC-CG-ACCGCUuaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 150617 | 0.68 | 0.916559 |
Target: 5'- gGGGCGAGuCUGCucuCUGGCGAGgcgGCGc -3' miRNA: 3'- -CUCGUUU-GACGcc-GACCGCUUaa-CGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 156997 | 0.73 | 0.713256 |
Target: 5'- aGGGCGAuaACcGCGGCcaGGCGAGUgGCGg -3' miRNA: 3'- -CUCGUU--UGaCGCCGa-CCGCUUAaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 92484 | 0.71 | 0.810494 |
Target: 5'- cGGGUAcACUGCGG-UGGCGG--UGCGc -3' miRNA: 3'- -CUCGUuUGACGCCgACCGCUuaACGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 79214 | 0.7 | 0.845134 |
Target: 5'- gGGGCuAGGCUGCGuGCaGGCGGcg-GCGg -3' miRNA: 3'- -CUCG-UUUGACGC-CGaCCGCUuaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 159822 | 0.7 | 0.845134 |
Target: 5'- -uGCAAACUGCGGggGGCGcuggauGAUUaGCGc -3' miRNA: 3'- cuCGUUUGACGCCgaCCGC------UUAA-CGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 41620 | 0.69 | 0.868993 |
Target: 5'- cGAGCucguAGaaGCGGCUGGCcAGaUGCGg -3' miRNA: 3'- -CUCGu---UUgaCGCCGACCGcUUaACGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 33972 | 0.69 | 0.876504 |
Target: 5'- -cGCAAGCUGUccGCUGGCGAccagaGCGg -3' miRNA: 3'- cuCGUUUGACGc-CGACCGCUuaa--CGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 36805 | 0.69 | 0.890828 |
Target: 5'- uAGUugucuCUGCGGCgcaGGCGAGgcGCGg -3' miRNA: 3'- cUCGuuu--GACGCCGa--CCGCUUaaCGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 154612 | 0.68 | 0.910499 |
Target: 5'- gGAGCu-GCUGCGGCUucGGCcGAUggccGCGu -3' miRNA: 3'- -CUCGuuUGACGCCGA--CCGcUUAa---CGC- -5' |
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24463 | 3' | -53.1 | NC_005264.1 | + | 67425 | 1.09 | 0.005103 |
Target: 5'- aGAGCAAACUGCGGCUGGCGAAUUGCGu -3' miRNA: 3'- -CUCGUUUGACGCCGACCGCUUAACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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