miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24463 5' -54.8 NC_005264.1 + 116422 0.66 0.949795
Target:  5'- cGGCAGGUCgCUggggGCGUCUGGCcgcggGGg -3'
miRNA:   3'- -UCGUUCAG-GG----UGCGGACCGucaaaCC- -5'
24463 5' -54.8 NC_005264.1 + 14402 0.66 0.93459
Target:  5'- cGCAGcgugguauaacuccGUCCCACGCCcguaUGGCGGc---- -3'
miRNA:   3'- uCGUU--------------CAGGGUGCGG----ACCGUCaaacc -5'
24463 5' -54.8 NC_005264.1 + 117080 0.66 0.92573
Target:  5'- cGCGcGcCCCGCGCagggguccuaUGGCAGUUUucGGa -3'
miRNA:   3'- uCGUuCaGGGUGCGg---------ACCGUCAAA--CC- -5'
24463 5' -54.8 NC_005264.1 + 22215 0.67 0.90212
Target:  5'- cGGCAAGUggagUCguCGCCUcgucGGCGGUcUGGg -3'
miRNA:   3'- -UCGUUCA----GGguGCGGA----CCGUCAaACC- -5'
24463 5' -54.8 NC_005264.1 + 144542 0.67 0.899548
Target:  5'- gGGCGGGUCCUAgGCauucccccugggGGCGGUacUGGg -3'
miRNA:   3'- -UCGUUCAGGGUgCGga----------CCGUCAa-ACC- -5'
24463 5' -54.8 NC_005264.1 + 143319 0.68 0.874729
Target:  5'- cGGCGGccGUCCCGagcuucucguCGUCUGGCAGc-UGGa -3'
miRNA:   3'- -UCGUU--CAGGGU----------GCGGACCGUCaaACC- -5'
24463 5' -54.8 NC_005264.1 + 3848 0.68 0.867318
Target:  5'- uGGCAugGGUCCUGCGCCgGGgA--UUGGg -3'
miRNA:   3'- -UCGU--UCAGGGUGCGGaCCgUcaAACC- -5'
24463 5' -54.8 NC_005264.1 + 126404 0.68 0.859692
Target:  5'- aGGCAAGUCgucuCCGCgGCCUG-CAGguacUUGGg -3'
miRNA:   3'- -UCGUUCAG----GGUG-CGGACcGUCa---AACC- -5'
24463 5' -54.8 NC_005264.1 + 9011 0.68 0.859692
Target:  5'- aGGCGagccgccguuAGUCCCgacgcguucGCGCCUGGC---UUGGg -3'
miRNA:   3'- -UCGU----------UCAGGG---------UGCGGACCGucaAACC- -5'
24463 5' -54.8 NC_005264.1 + 16765 0.68 0.859692
Target:  5'- uAGCgAGGUCCCGaucguCGCC-GGCGGUcucugUGGc -3'
miRNA:   3'- -UCG-UUCAGGGU-----GCGGaCCGUCAa----ACC- -5'
24463 5' -54.8 NC_005264.1 + 38333 0.69 0.827164
Target:  5'- uGGCGGG-CCCugGCCgugaugcugGGCGGcg-GGg -3'
miRNA:   3'- -UCGUUCaGGGugCGGa--------CCGUCaaaCC- -5'
24463 5' -54.8 NC_005264.1 + 157360 0.69 0.827164
Target:  5'- uGGCGGG-CCCugGCCgugaugcugGGCGGcg-GGg -3'
miRNA:   3'- -UCGUUCaGGGugCGGa--------CCGUCaaaCC- -5'
24463 5' -54.8 NC_005264.1 + 101071 0.7 0.782517
Target:  5'- cGCGGGggccauuucUCUCACGCCUGGCccuguucuucacAGUcUGGg -3'
miRNA:   3'- uCGUUC---------AGGGUGCGGACCG------------UCAaACC- -5'
24463 5' -54.8 NC_005264.1 + 145534 0.7 0.754011
Target:  5'- uGGCAGGUCUCGCGCUa-GCGGUaaccgUGGc -3'
miRNA:   3'- -UCGUUCAGGGUGCGGacCGUCAa----ACC- -5'
24463 5' -54.8 NC_005264.1 + 94588 0.71 0.744278
Target:  5'- cAGCAGGccgCCCGCggcgcgggcaugGCUUGGCGGUgcggcgUGGa -3'
miRNA:   3'- -UCGUUCa--GGGUG------------CGGACCGUCAa-----ACC- -5'
24463 5' -54.8 NC_005264.1 + 156610 0.71 0.724521
Target:  5'- cGGCAAGUCUCGCGgCggccgcGGCGGg--GGg -3'
miRNA:   3'- -UCGUUCAGGGUGCgGa-----CCGUCaaaCC- -5'
24463 5' -54.8 NC_005264.1 + 37583 0.71 0.724521
Target:  5'- cGGCAAGUCUCGCGgCggccgcGGCGGg--GGg -3'
miRNA:   3'- -UCGUUCAGGGUGCgGa-----CCGUCaaaCC- -5'
24463 5' -54.8 NC_005264.1 + 53271 0.72 0.66361
Target:  5'- uGGCuugcuGUCCCGCGgCgccGCAGUUUGGu -3'
miRNA:   3'- -UCGuu---CAGGGUGCgGac-CGUCAAACC- -5'
24463 5' -54.8 NC_005264.1 + 77918 0.73 0.591474
Target:  5'- cGCuuuGUCCCGCGCCUGGCu------ -3'
miRNA:   3'- uCGuu-CAGGGUGCGGACCGucaaacc -5'
24463 5' -54.8 NC_005264.1 + 67459 1.1 0.003266
Target:  5'- gAGCAAGUCCCACGCCUGGCAGUUUGGc -3'
miRNA:   3'- -UCGUUCAGGGUGCGGACCGUCAAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.