miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24464 3' -64.9 NC_005264.1 + 126918 0.66 0.580281
Target:  5'- gCGGCgucggaggucuccucGCCGGaGUacuGGGGGGaCGUaacGCUGCc -3'
miRNA:   3'- gGCCG---------------CGGCC-CG---CCCCCC-GCA---UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 7892 0.66 0.580281
Target:  5'- gCGGCgucggaggucuccucGCCGGaGUacuGGGGGGaCGUaacGCUGCc -3'
miRNA:   3'- gGCCG---------------CGGCC-CG---CCCCCC-GCA---UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 91556 0.66 0.567111
Target:  5'- uCgGGCGC--GGCGGGGGGCacgagGCUugucGCg -3'
miRNA:   3'- -GgCCGCGgcCCGCCCCCCGca---UGA----UG- -5'
24464 3' -64.9 NC_005264.1 + 84949 0.66 0.55775
Target:  5'- gUGGCGCCGGGUGcucgcuugcGGccaGGC-UGCUGCg -3'
miRNA:   3'- gGCCGCGGCCCGC---------CCc--CCGcAUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 25612 0.66 0.548434
Target:  5'- gCCGGCGuuGcggaacacggcGGCGGuGGGGcCGcGCUccGCg -3'
miRNA:   3'- -GGCCGCggC-----------CCGCC-CCCC-GCaUGA--UG- -5'
24464 3' -64.9 NC_005264.1 + 121910 0.66 0.548434
Target:  5'- aCCGGgGCgCGGcGCGGcGGGGaggGCgacgGCg -3'
miRNA:   3'- -GGCCgCG-GCC-CGCC-CCCCgcaUGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 2884 0.66 0.548434
Target:  5'- aCCGGgGCgCGGcGCGGcGGGGaggGCgacgGCg -3'
miRNA:   3'- -GGCCgCG-GCC-CGCC-CCCCgcaUGa---UG- -5'
24464 3' -64.9 NC_005264.1 + 25713 0.66 0.548434
Target:  5'- uUGGCG-CGGGCGGcagcGGuGCGUACUc- -3'
miRNA:   3'- gGCCGCgGCCCGCCc---CC-CGCAUGAug -5'
24464 3' -64.9 NC_005264.1 + 19425 0.66 0.548434
Target:  5'- -aGGCGCCGGGUGuggccgcGGGGCGcgGgUGg -3'
miRNA:   3'- ggCCGCGGCCCGCc------CCCCGCa-UgAUg -5'
24464 3' -64.9 NC_005264.1 + 158250 0.66 0.539167
Target:  5'- gCGGCGCU-GGCGGGgaGGGCcUGCg-- -3'
miRNA:   3'- gGCCGCGGcCCGCCC--CCCGcAUGaug -5'
24464 3' -64.9 NC_005264.1 + 39223 0.66 0.539167
Target:  5'- gCGGCGCU-GGCGGGgaGGGCcUGCg-- -3'
miRNA:   3'- gGCCGCGGcCCGCCC--CCCGcAUGaug -5'
24464 3' -64.9 NC_005264.1 + 25090 0.66 0.529954
Target:  5'- uUCGGCGCCGGGgacaaGcGGGGCagACUuaGCg -3'
miRNA:   3'- -GGCCGCGGCCCg----CcCCCCGcaUGA--UG- -5'
24464 3' -64.9 NC_005264.1 + 149571 0.67 0.520799
Target:  5'- gCGGacaGCCccGGGCGGaGGGGg--GCUGCu -3'
miRNA:   3'- gGCCg--CGG--CCCGCC-CCCCgcaUGAUG- -5'
24464 3' -64.9 NC_005264.1 + 68735 0.67 0.515336
Target:  5'- gCGGCGCCagaaccucGGGCGGGuuuaggacagagccGGCGUcgucuaacaauuGCUGCu -3'
miRNA:   3'- gGCCGCGG--------CCCGCCCc-------------CCGCA------------UGAUG- -5'
24464 3' -64.9 NC_005264.1 + 137288 0.67 0.511707
Target:  5'- gCGGCGuuG-GCGGcgacgcGGGCGUACgGCa -3'
miRNA:   3'- gGCCGCggCcCGCCc-----CCCGCAUGaUG- -5'
24464 3' -64.9 NC_005264.1 + 3488 0.67 0.511707
Target:  5'- gCCGcCGCaCGcGGCGGGGGGCa------ -3'
miRNA:   3'- -GGCcGCG-GC-CCGCCCCCCGcaugaug -5'
24464 3' -64.9 NC_005264.1 + 16570 0.67 0.511707
Target:  5'- gCGGCGCCgGGGCGGc-GGCGcACa-- -3'
miRNA:   3'- gGCCGCGG-CCCGCCccCCGCaUGaug -5'
24464 3' -64.9 NC_005264.1 + 49597 0.67 0.511707
Target:  5'- gCCGGCGaCCaGGacgaCGGGGGGCGc----- -3'
miRNA:   3'- -GGCCGC-GGcCC----GCCCCCCGCaugaug -5'
24464 3' -64.9 NC_005264.1 + 122515 0.67 0.511707
Target:  5'- gCCGcCGCaCGcGGCGGGGGGCa------ -3'
miRNA:   3'- -GGCcGCG-GC-CCGCCCCCCGcaugaug -5'
24464 3' -64.9 NC_005264.1 + 14053 0.67 0.502681
Target:  5'- gCGGgGCCGGGUGGGaa-CGUGC-ACg -3'
miRNA:   3'- gGCCgCGGCCCGCCCcccGCAUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.